Protein–RNA interactions for Protein: P58872

RHBDL3, Rhomboid-related protein 3, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDL3P58872 FAM187B2P-201ENST00000577135 713 ntBASIC16.31■□□□□ 0.2
RHBDL3P58872 AL139339.2-201ENST00000608063 657 ntBASIC16.31■□□□□ 0.2
RHBDL3P58872 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
RHBDL3P58872 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RHBDL3P58872 IARS2-201ENST00000366922 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RHBDL3P58872 AL513497.1-201ENST00000624273 2083 ntBASIC16.31■□□□□ 0.2
RHBDL3P58872 RDH12-203ENST00000551171 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RHBDL3P58872 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RHBDL3P58872 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RHBDL3P58872 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
RHBDL3P58872 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RHBDL3P58872 FAM153C-201ENST00000398106 1510 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
RHBDL3P58872 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RHBDL3P58872 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RHBDL3P58872 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RHBDL3P58872 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
RHBDL3P58872 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC16.3■□□□□ 0.2
RHBDL3P58872 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
RHBDL3P58872 AL365181.3-201ENST00000605886 3222 ntBASIC16.3■□□□□ 0.2
RHBDL3P58872 NAP1L2-201ENST00000373517 2550 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
RHBDL3P58872 CLUL1-202ENST00000400606 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RHBDL3P58872 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RHBDL3P58872 RPSAP12-201ENST00000435879 888 ntBASIC16.3■□□□□ 0.2
RHBDL3P58872 NRADDP-201ENST00000437305 691 ntBASIC16.3■□□□□ 0.2
RHBDL3P58872 VDAC1P11-201ENST00000458323 852 ntBASIC16.3■□□□□ 0.2
RHBDL3P58872 CASP3-205ENST00000517513 964 ntTSL 5 BASIC16.3■□□□□ 0.2
RHBDL3P58872 AC012158.2-201ENST00000536546 354 ntBASIC16.3■□□□□ 0.2
RHBDL3P58872 SLC25A3-215ENST00000551265 580 ntTSL 4 BASIC16.3■□□□□ 0.2
RHBDL3P58872 KRT18P8-201ENST00000581937 1246 ntBASIC16.3■□□□□ 0.2
RHBDL3P58872 AC016586.1-201ENST00000600056 684 ntTSL 3 BASIC16.3■□□□□ 0.2
RHBDL3P58872 AL451165.2-201ENST00000606971 718 ntTSL 2 BASIC16.3■□□□□ 0.2
RHBDL3P58872 AC012087.1-201ENST00000608068 809 ntTSL 5 BASIC16.3■□□□□ 0.2
RHBDL3P58872 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RHBDL3P58872 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
RHBDL3P58872 HSPA6-201ENST00000309758 2371 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
RHBDL3P58872 NORAD-201ENST00000565493 5339 ntBASIC16.3■□□□□ 0.2
RHBDL3P58872 TOB2-201ENST00000327492 4561 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RHBDL3P58872 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC16.3■□□□□ 0.2
RHBDL3P58872 RNF121-211ENST00000530137 2202 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RHBDL3P58872 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC16.3■□□□□ 0.2
RHBDL3P58872 CSF3-204ENST00000394149 1583 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
RHBDL3P58872 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
RHBDL3P58872 AAR2-203ENST00000397286 1466 ntTSL 5 BASIC16.29■□□□□ 0.2
RHBDL3P58872 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RHBDL3P58872 GAS2L1-209ENST00000618518 3382 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
RHBDL3P58872 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
RHBDL3P58872 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
RHBDL3P58872 TMPO-202ENST00000266732 3615 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RHBDL3P58872 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RHBDL3P58872 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RHBDL3P58872 SLC38A5-210ENST00000595796 2659 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RHBDL3P58872 LINC01138-206ENST00000622328 2212 ntTSL 2 BASIC16.29■□□□□ 0.2
RHBDL3P58872 FAHD2B-201ENST00000272610 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RHBDL3P58872 TAGLN3-205ENST00000478951 1301 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RHBDL3P58872 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RHBDL3P58872 CHEK2-203ENST00000382565 696 ntTSL 5 BASIC16.29■□□□□ 0.2
RHBDL3P58872 CDRT15L2-201ENST00000399044 1048 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
RHBDL3P58872 AC104961.1-201ENST00000427605 771 ntBASIC16.29■□□□□ 0.2
RHBDL3P58872 AC019118.1-201ENST00000454530 435 ntTSL 3 BASIC16.29■□□□□ 0.2
RHBDL3P58872 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC16.29■□□□□ 0.2
RHBDL3P58872 AC008443.1-202ENST00000506340 687 ntTSL 2 BASIC16.29■□□□□ 0.2
RHBDL3P58872 AC104964.1-201ENST00000520494 489 ntTSL 2 BASIC16.29■□□□□ 0.2
RHBDL3P58872 ORAOV1-205ENST00000535657 709 ntAPPRIS P2 TSL 3 BASIC16.29■□□□□ 0.2
RHBDL3P58872 KNOP1P1-201ENST00000542108 989 ntBASIC16.29■□□□□ 0.2
RHBDL3P58872 AC068675.1-201ENST00000588996 561 ntTSL 4 BASIC16.29■□□□□ 0.2
RHBDL3P58872 AC010531.8-201ENST00000623341 685 ntBASIC16.29■□□□□ 0.2
RHBDL3P58872 ZFYVE19-215ENST00000570108 1669 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
RHBDL3P58872 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RHBDL3P58872 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RHBDL3P58872 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC16.29■□□□□ 0.2
RHBDL3P58872 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RHBDL3P58872 OR2V1-204ENST00000641551 2423 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
RHBDL3P58872 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RHBDL3P58872 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RHBDL3P58872 ERG-211ENST00000453032 1595 ntTSL 2 BASIC16.29■□□□□ 0.2
RHBDL3P58872 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RHBDL3P58872 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
RHBDL3P58872 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
RHBDL3P58872 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
RHBDL3P58872 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
RHBDL3P58872 PEX5L-211ENST00000472994 2235 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
RHBDL3P58872 SHISA5-206ENST00000426002 1839 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RHBDL3P58872 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RHBDL3P58872 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
RHBDL3P58872 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RHBDL3P58872 MAGEC3-205ENST00000544766 1707 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
RHBDL3P58872 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
RHBDL3P58872 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
RHBDL3P58872 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RHBDL3P58872 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RHBDL3P58872 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RHBDL3P58872 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC16.28■□□□□ 0.2
RHBDL3P58872 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RHBDL3P58872 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC16.28■□□□□ 0.2
RHBDL3P58872 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RHBDL3P58872 SIRPB3P-201ENST00000340424 1216 ntBASIC16.28■□□□□ 0.2
RHBDL3P58872 AC234644.1-201ENST00000406065 370 ntBASIC16.28■□□□□ 0.2
RHBDL3P58872 AC092570.1-201ENST00000414446 469 ntBASIC16.28■□□□□ 0.2
RHBDL3P58872 AL390961.2-201ENST00000454991 472 ntTSL 3 BASIC16.28■□□□□ 0.2
RHBDL3P58872 RPL29P2-202ENST00000498671 657 ntBASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms