Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
SMARCA1P28370 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
SMARCA1P28370 PFN2-202ENST00000423691 911 ntTSL 2 BASIC15.96■□□□□ 0.15
SMARCA1P28370 AL121656.1-201ENST00000440786 482 ntTSL 5 BASIC15.96■□□□□ 0.15
SMARCA1P28370 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
SMARCA1P28370 AC135782.3-201ENST00000562782 2105 ntBASIC15.96■□□□□ 0.15
SMARCA1P28370 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
SMARCA1P28370 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
SMARCA1P28370 AC068675.1-201ENST00000588996 561 ntTSL 4 BASIC15.96■□□□□ 0.15
SMARCA1P28370 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC15.96■□□□□ 0.15
SMARCA1P28370 ST5-261ENST00000626808 1071 ntTSL 5 BASIC15.96■□□□□ 0.15
SMARCA1P28370 AC007326.2-201ENST00000624224 7579 ntBASIC15.96■□□□□ 0.15
SMARCA1P28370 AC130686.1-201ENST00000622936 2466 ntBASIC15.96■□□□□ 0.15
SMARCA1P28370 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC15.96■□□□□ 0.15
SMARCA1P28370 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC15.96■□□□□ 0.15
SMARCA1P28370 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SMARCA1P28370 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC15.96■□□□□ 0.15
SMARCA1P28370 UBE2A-206ENST00000625938 1381 ntTSL 2 BASIC15.96■□□□□ 0.15
SMARCA1P28370 ADAMTS15-201ENST00000299164 5673 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SMARCA1P28370 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
SMARCA1P28370 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
SMARCA1P28370 SERPINA13P-201ENST00000469935 1718 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
SMARCA1P28370 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
SMARCA1P28370 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC15.96■□□□□ 0.15
SMARCA1P28370 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.14
SMARCA1P28370 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
SMARCA1P28370 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.14
SMARCA1P28370 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC15.96■□□□□ 0.14
SMARCA1P28370 DLGAP1-202ENST00000400145 2188 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
SMARCA1P28370 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.14
SMARCA1P28370 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
SMARCA1P28370 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC15.96■□□□□ 0.14
SMARCA1P28370 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC15.96■□□□□ 0.14
SMARCA1P28370 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.14
SMARCA1P28370 PAPD7-207ENST00000631941 1902 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.14
SMARCA1P28370 MARCH9-202ENST00000548358 1668 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SMARCA1P28370 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SMARCA1P28370 TLN2-202ENST00000472902 2116 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SMARCA1P28370 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC15.95■□□□□ 0.14
SMARCA1P28370 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
SMARCA1P28370 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SMARCA1P28370 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SMARCA1P28370 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SMARCA1P28370 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC15.95■□□□□ 0.14
SMARCA1P28370 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SMARCA1P28370 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SMARCA1P28370 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC15.95■□□□□ 0.14
SMARCA1P28370 TNFSF13-203ENST00000380535 2195 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SMARCA1P28370 TMEM254-213ENST00000613758 2154 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
SMARCA1P28370 SIGLECL1-201ENST00000316401 1708 ntAPPRIS P3 TSL 2 BASIC15.95■□□□□ 0.14
SMARCA1P28370 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC15.95■□□□□ 0.14
SMARCA1P28370 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC15.95■□□□□ 0.14
SMARCA1P28370 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC15.95■□□□□ 0.14
SMARCA1P28370 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC15.95■□□□□ 0.14
SMARCA1P28370 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC15.95■□□□□ 0.14
SMARCA1P28370 EEF1GP8-201ENST00000506566 1154 ntBASIC15.95■□□□□ 0.14
SMARCA1P28370 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC15.95■□□□□ 0.14
SMARCA1P28370 IQSEC3P1-201ENST00000538799 536 ntBASIC15.95■□□□□ 0.14
SMARCA1P28370 C11orf97-201ENST00000542198 701 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
SMARCA1P28370 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC15.95■□□□□ 0.14
SMARCA1P28370 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC15.95■□□□□ 0.14
SMARCA1P28370 Metazoa_SRP.144-201ENST00000617007 311 ntBASIC15.95■□□□□ 0.14
SMARCA1P28370 MIR6858-201ENST00000620733 67 ntBASIC15.95■□□□□ 0.14
SMARCA1P28370 ATXN2L-202ENST00000336783 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
SMARCA1P28370 MAP2K7-203ENST00000397983 3396 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SMARCA1P28370 RIN2-202ENST00000440354 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
SMARCA1P28370 MUC1-225ENST00000612778 1836 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
SMARCA1P28370 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SMARCA1P28370 AC090502.4-201ENST00000551714 1386 ntBASIC15.95■□□□□ 0.14
SMARCA1P28370 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC15.95■□□□□ 0.14
SMARCA1P28370 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC15.95■□□□□ 0.14
SMARCA1P28370 ASGR1-209ENST00000619926 1384 ntTSL 5 BASIC15.95■□□□□ 0.14
SMARCA1P28370 SPATS2L-209ENST00000409988 2698 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
SMARCA1P28370 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC15.95■□□□□ 0.14
SMARCA1P28370 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC15.95■□□□□ 0.14
SMARCA1P28370 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
SMARCA1P28370 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
SMARCA1P28370 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SMARCA1P28370 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
SMARCA1P28370 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
SMARCA1P28370 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
SMARCA1P28370 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SMARCA1P28370 TMEM78-201ENST00000323223 2175 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
SMARCA1P28370 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SMARCA1P28370 AC005840.4-201ENST00000541242 2494 ntBASIC15.94■□□□□ 0.14
SMARCA1P28370 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SMARCA1P28370 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
SMARCA1P28370 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC15.94■□□□□ 0.14
SMARCA1P28370 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
SMARCA1P28370 CATSPERD-202ENST00000381624 2516 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SMARCA1P28370 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
SMARCA1P28370 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SMARCA1P28370 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SMARCA1P28370 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
SMARCA1P28370 VPREB1-202ENST00000403807 755 ntAPPRIS P3 TSL 1 (best) BASIC15.94■□□□□ 0.14
SMARCA1P28370 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
SMARCA1P28370 AC079112.1-201ENST00000454972 939 ntBASIC15.94■□□□□ 0.14
SMARCA1P28370 C14orf132-201ENST00000553764 562 ntTSL 4 BASIC15.94■□□□□ 0.14
SMARCA1P28370 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC15.94■□□□□ 0.14
SMARCA1P28370 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 64.6 ms