Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 SERF2-204ENST00000402131 586 ntTSL 2 BASIC13.04□□□□□ -0.32
COL5A1P20908 AL357079.1-203ENST00000412378 494 ntTSL 5 BASIC13.04□□□□□ -0.32
COL5A1P20908 PLA2G6-210ENST00000435484 612 ntTSL 4 BASIC13.04□□□□□ -0.32
COL5A1P20908 RPL35P1-201ENST00000450819 370 ntBASIC13.04□□□□□ -0.32
COL5A1P20908 TIMMDC1-207ENST00000493694 710 ntTSL 2 BASIC13.04□□□□□ -0.32
COL5A1P20908 AC093510.1-202ENST00000546238 442 ntTSL 3 BASIC13.04□□□□□ -0.32
COL5A1P20908 GLIPR1L2-203ENST00000547164 509 ntTSL 5 BASIC13.04□□□□□ -0.32
COL5A1P20908 MAFG-AS1-202ENST00000583492 969 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
COL5A1P20908 AL080250.1-203ENST00000607799 747 ntTSL 2 BASIC13.04□□□□□ -0.32
COL5A1P20908 AC083798.2-202ENST00000609469 553 ntTSL 4 BASIC13.04□□□□□ -0.32
COL5A1P20908 TMEM230-211ENST00000615008 594 ntTSL 4 BASIC13.04□□□□□ -0.32
COL5A1P20908 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL5A1P20908 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL5A1P20908 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
COL5A1P20908 AL157996.1-201ENST00000624684 2299 ntBASIC13.03□□□□□ -0.32
COL5A1P20908 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL5A1P20908 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL5A1P20908 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL5A1P20908 AL031590.1-202ENST00000641466 1737 ntBASIC13.03□□□□□ -0.32
COL5A1P20908 AC012358.2-201ENST00000430010 1434 ntBASIC13.03□□□□□ -0.32
COL5A1P20908 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
COL5A1P20908 CAPN1-224ENST00000533129 2792 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
COL5A1P20908 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC13.03□□□□□ -0.32
COL5A1P20908 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL5A1P20908 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL5A1P20908 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL5A1P20908 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL5A1P20908 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL5A1P20908 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC13.03□□□□□ -0.32
COL5A1P20908 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL5A1P20908 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL5A1P20908 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL5A1P20908 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL5A1P20908 CNGB1-202ENST00000311183 1633 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL5A1P20908 SPAG8-202ENST00000396638 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL5A1P20908 COPS5-203ENST00000517736 1621 ntTSL 5 BASIC13.03□□□□□ -0.32
COL5A1P20908 POLR2F-202ENST00000405557 560 ntTSL 5 BASIC13.03□□□□□ -0.32
COL5A1P20908 RBMXP1-201ENST00000408004 1191 ntBASIC13.03□□□□□ -0.32
COL5A1P20908 PYM1-203ENST00000408946 1226 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL5A1P20908 AC007391.1-201ENST00000433893 504 ntTSL 2 BASIC13.03□□□□□ -0.32
COL5A1P20908 CDKN2A-AS1-201ENST00000441769 823 ntBASIC13.03□□□□□ -0.32
COL5A1P20908 AL662797.1-201ENST00000442852 799 ntTSL 3 BASIC13.03□□□□□ -0.32
COL5A1P20908 RN7SL173P-201ENST00000461853 292 ntBASIC13.03□□□□□ -0.32
COL5A1P20908 GYG1-209ENST00000483267 801 ntTSL 2 BASIC13.03□□□□□ -0.32
COL5A1P20908 AL445363.2-201ENST00000554608 837 ntTSL 2 BASIC13.03□□□□□ -0.32
COL5A1P20908 HNRNPC-221ENST00000555883 1182 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL5A1P20908 AL121790.2-202ENST00000556024 363 ntTSL 5 BASIC13.03□□□□□ -0.32
COL5A1P20908 AC133555.4-201ENST00000569081 152 ntBASIC13.03□□□□□ -0.32
COL5A1P20908 CLPP-205ENST00000596605 646 ntTSL 2 BASIC13.03□□□□□ -0.32
COL5A1P20908 POLR2F-213ENST00000606538 760 ntTSL 2 BASIC13.03□□□□□ -0.32
COL5A1P20908 AC092535.4-201ENST00000609548 397 ntBASIC13.03□□□□□ -0.32
COL5A1P20908 ITGB2-AS1-204ENST00000609592 482 ntTSL 5 BASIC13.03□□□□□ -0.32
COL5A1P20908 AL445363.1-201ENST00000623749 952 ntTSL 2 BASIC13.03□□□□□ -0.32
COL5A1P20908 OAZ3-207ENST00000627780 850 ntTSL 5 BASIC13.03□□□□□ -0.32
COL5A1P20908 OAZ3-209ENST00000635322 745 ntTSL 5 BASIC13.03□□□□□ -0.32
COL5A1P20908 SVIL-AS1-204ENST00000427063 2025 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL5A1P20908 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL5A1P20908 BPIFB1-201ENST00000253354 1727 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL5A1P20908 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
COL5A1P20908 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL5A1P20908 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL5A1P20908 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL5A1P20908 SNRPN-205ENST00000400100 1751 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL5A1P20908 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL5A1P20908 VAPB-202ENST00000395802 1834 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL5A1P20908 CXorf40A-212ENST00000514208 1840 ntAPPRIS ALT1 TSL 5 BASIC13.03□□□□□ -0.32
COL5A1P20908 OSCP1-201ENST00000235532 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
COL5A1P20908 OSCP1-203ENST00000356637 1463 ntTSL 5 BASIC13.03□□□□□ -0.32
COL5A1P20908 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC13.03□□□□□ -0.32
COL5A1P20908 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
COL5A1P20908 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC13.03□□□□□ -0.32
COL5A1P20908 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
COL5A1P20908 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
COL5A1P20908 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC13.03□□□□□ -0.32
COL5A1P20908 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
COL5A1P20908 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC13.02□□□□□ -0.32
COL5A1P20908 AL591806.3-201ENST00000289779 2096 ntAPPRIS P5 TSL 2 BASIC13.02□□□□□ -0.32
COL5A1P20908 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC13.02□□□□□ -0.32
COL5A1P20908 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
COL5A1P20908 OR2V2-201ENST00000328275 948 ntAPPRIS P1 BASIC13.02□□□□□ -0.32
COL5A1P20908 INO80C-202ENST00000334598 974 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
COL5A1P20908 POP5-201ENST00000341039 913 ntTSL 2 BASIC13.02□□□□□ -0.32
COL5A1P20908 GHRL-206ENST00000430179 856 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.32
COL5A1P20908 GTF2I-203ENST00000443166 979 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
COL5A1P20908 RAB34-211ENST00000450529 1184 ntTSL 2 BASIC13.02□□□□□ -0.32
COL5A1P20908 AC004969.1-201ENST00000471553 578 ntTSL 5 BASIC13.02□□□□□ -0.32
COL5A1P20908 RN7SL672P-201ENST00000474091 317 ntBASIC13.02□□□□□ -0.32
COL5A1P20908 AC022447.5-201ENST00000504817 392 ntBASIC13.02□□□□□ -0.32
COL5A1P20908 PIGH-210ENST00000560722 903 ntAPPRIS ALT1 TSL 2 BASIC13.02□□□□□ -0.32
COL5A1P20908 AC026583.1-201ENST00000561310 569 ntTSL 4 BASIC13.02□□□□□ -0.32
COL5A1P20908 INO80E-209ENST00000567254 625 ntTSL 2 BASIC13.02□□□□□ -0.32
COL5A1P20908 CYB5D2-202ENST00000573984 495 ntTSL 4 BASIC13.02□□□□□ -0.32
COL5A1P20908 LINC01444-201ENST00000580867 764 ntTSL 2 BASIC13.02□□□□□ -0.32
COL5A1P20908 AC138150.1-201ENST00000589950 570 ntTSL 4 BASIC13.02□□□□□ -0.32
COL5A1P20908 AC011483.3-201ENST00000601506 826 ntTSL 3 BASIC13.02□□□□□ -0.32
COL5A1P20908 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
COL5A1P20908 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
COL5A1P20908 SERHL2-201ENST00000327678 1374 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
COL5A1P20908 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC13.02□□□□□ -0.32
COL5A1P20908 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC13.02□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms