Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
VPS13AQ96RL7 VPREB3-201ENST00000248948 610 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 GEMIN8-203ENST00000398355 1119 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 VPREB3-202ENST00000398465 503 ntTSL 3 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 AP000281.2-201ENST00000427911 384 ntTSL 3 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 HTATIP2-203ENST00000443524 967 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 SVILP1-203ENST00000450581 486 ntTSL 3 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 AC103810.4-201ENST00000578601 257 ntBASIC13.38□□□□□ -0.27
VPS13AQ96RL7 AC018766.1-201ENST00000601211 484 ntTSL 3 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 AL121992.3-201ENST00000606186 346 ntBASIC13.38□□□□□ -0.27
VPS13AQ96RL7 Metazoa_SRP.152-201ENST00000614413 286 ntBASIC13.38□□□□□ -0.27
VPS13AQ96RL7 FAM107A-206ENST00000474531 2271 ntTSL 2 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 CREB5-205ENST00000409603 1944 ntTSL 2 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 GLB1-203ENST00000399402 2512 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 PSMB8-201ENST00000374881 1351 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 EBF3-201ENST00000355311 2993 ntAPPRIS ALT1 TSL 5 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 AOC1-201ENST00000360937 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 AL157832.2-205ENST00000597245 1649 ntBASIC13.38□□□□□ -0.27
VPS13AQ96RL7 AC007603.1-201ENST00000563124 2085 ntTSL 2 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 AL606760.3-201ENST00000569869 3591 ntBASIC13.38□□□□□ -0.27
VPS13AQ96RL7 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 TFAM-201ENST00000373895 973 ntTSL 2 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 PGAM1P10-201ENST00000402426 761 ntBASIC13.38□□□□□ -0.27
VPS13AQ96RL7 TPI1P2-201ENST00000491343 752 ntBASIC13.38□□□□□ -0.27
VPS13AQ96RL7 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 IFI27L1-211ENST00000557066 580 ntTSL 3 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 RN7SL750P-201ENST00000582814 238 ntBASIC13.38□□□□□ -0.27
VPS13AQ96RL7 AP001180.4-201ENST00000584167 823 ntTSL 3 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 AC092634.5-206ENST00000593670 812 ntTSL 5 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 CYP2B6-202ENST00000593831 1426 ntTSL 2 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 AC011479.2-201ENST00000598146 432 ntTSL 3 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 AC092535.1-201ENST00000417557 2165 ntTSL 2 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 VOPP1-204ENST00000418904 1317 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 CHIT1-201ENST00000255427 1598 ntTSL 2 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 PBX3-201ENST00000342287 2755 ntAPPRIS ALT1 TSL 5 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 FTO-214ENST00000636218 2227 ntTSL 5 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 AC016304.1-201ENST00000476363 413 ntBASIC13.38□□□□□ -0.27
VPS13AQ96RL7 AC027290.1-201ENST00000537827 484 ntTSL 5 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 AC136475.1-203ENST00000602756 1034 ntTSL 3 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 TMEM230-211ENST00000615008 594 ntTSL 4 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 DRD2-210ENST00000544518 2473 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
VPS13AQ96RL7 DRD2-204ENST00000538967 1493 ntAPPRIS ALT1 TSL 5 BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 USP8-219ENST00000625664 1568 ntTSL 5 BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 TPM3P7-201ENST00000338274 732 ntBASIC13.37□□□□□ -0.27
VPS13AQ96RL7 DHRSX-IT1-201ENST00000437244 651 ntTSL 5 BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 AC093627.3-201ENST00000467050 574 ntTSL 4 BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 OARD1-214ENST00000486443 764 ntTSL 3 BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 MYCBP-203ENST00000494695 750 ntTSL 2 BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 AC109830.1-203ENST00000506638 467 ntTSL 2 BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 AC009646.2-202ENST00000524425 826 ntTSL 3 BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 SLC6A12-207ENST00000536824 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 AC025259.1-201ENST00000550301 647 ntTSL 3 BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 AC108002.3-201ENST00000612629 503 ntTSL 2 BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 FGD5P1-202ENST00000614866 2498 ntBASIC13.37□□□□□ -0.27
VPS13AQ96RL7 CASP8-212ENST00000432109 1629 ntAPPRIS P4 TSL 5 BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 MOV10L1-202ENST00000354853 1701 ntTSL 2 BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 RCBTB2-206ENST00000544904 2984 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 TTC39B-201ENST00000297615 3053 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 AC041040.1-201ENST00000425197 460 ntBASIC13.37□□□□□ -0.27
VPS13AQ96RL7 AC002066.1-201ENST00000446355 514 ntTSL 5 BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 AP001922.6-201ENST00000532553 546 ntTSL 5 BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 AC017100.1-201ENST00000565978 1169 ntBASIC13.37□□□□□ -0.27
VPS13AQ96RL7 EIF5A-207ENST00000572815 811 ntTSL 5 BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 AC112702.1-201ENST00000623712 366 ntBASIC13.37□□□□□ -0.27
VPS13AQ96RL7 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
VPS13AQ96RL7 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC13.37□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms