Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 PCDHB4-201ENST00000194152 3825 ntAPPRIS P1 BASIC11.78□□□□□ -0.52
HOXA1P49639 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA1P49639 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA1P49639 PGGT1BP2-201ENST00000398621 1028 ntBASIC11.78□□□□□ -0.52
HOXA1P49639 LBH-203ENST00000404397 543 ntTSL 4 BASIC11.78□□□□□ -0.52
HOXA1P49639 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA1P49639 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC11.78□□□□□ -0.52
HOXA1P49639 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA1P49639 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA1P49639 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA1P49639 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA1P49639 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC11.78□□□□□ -0.52
HOXA1P49639 AC092552.1-201ENST00000547243 906 ntBASIC11.78□□□□□ -0.52
HOXA1P49639 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC11.78□□□□□ -0.52
HOXA1P49639 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC11.78□□□□□ -0.52
HOXA1P49639 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA1P49639 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC11.78□□□□□ -0.52
HOXA1P49639 DUSP22-211ENST00000604971 3824 ntTSL 2 BASIC11.78□□□□□ -0.52
HOXA1P49639 GPALPP1-207ENST00000611650 899 ntBASIC11.78□□□□□ -0.52
HOXA1P49639 MIR8072-201ENST00000614241 80 ntBASIC11.78□□□□□ -0.52
HOXA1P49639 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
HOXA1P49639 AC008758.4-201ENST00000435033 2593 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
HOXA1P49639 ST3GAL1-211ENST00000522652 2580 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA1P49639 TMEM120B-204ENST00000449592 7461 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA1P49639 IP6K1-202ENST00000395238 4117 ntTSL 3 BASIC11.78□□□□□ -0.52
HOXA1P49639 ZNF502-203ENST00000436624 2314 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
HOXA1P49639 CSF2RB-203ENST00000406230 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA1P49639 TUBB8P4-201ENST00000511806 1324 ntBASIC11.78□□□□□ -0.52
HOXA1P49639 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC11.78□□□□□ -0.52
HOXA1P49639 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA1P49639 FOXK1-201ENST00000328914 11181 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
HOXA1P49639 SLC5A11-201ENST00000347898 2745 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA1P49639 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA1P49639 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HOXA1P49639 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC11.78□□□□□ -0.52
HOXA1P49639 SPOCK3-203ENST00000421836 3061 ntAPPRIS ALT2 TSL 2 BASIC11.78□□□□□ -0.52
HOXA1P49639 LILRB3-203ENST00000391750 2848 ntAPPRIS P3 TSL 5 BASIC11.78□□□□□ -0.52
HOXA1P49639 GLI3-201ENST00000395925 8208 ntAPPRIS P1 TSL 5 BASIC11.78□□□□□ -0.52
HOXA1P49639 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
HOXA1P49639 PERP-201ENST00000421351 4290 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
HOXA1P49639 NTM-206ENST00000427481 2583 ntTSL 5 BASIC11.77□□□□□ -0.52
HOXA1P49639 NOB1-201ENST00000268802 1734 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
HOXA1P49639 ZNF683-205ENST00000436292 1712 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.52
HOXA1P49639 AL445209.1-201ENST00000607269 3491 ntBASIC11.77□□□□□ -0.52
HOXA1P49639 RBM4-205ENST00000409406 2321 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.52
HOXA1P49639 HSPA12A-205ENST00000635765 5841 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.52
HOXA1P49639 DHX34-201ENST00000328771 4372 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.52
HOXA1P49639 CAMKV-201ENST00000296471 2913 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
HOXA1P49639 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
HOXA1P49639 TMPRSS4-213ENST00000522824 2052 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
HOXA1P49639 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC11.77□□□□□ -0.52
HOXA1P49639 RALGPS1-201ENST00000259351 6336 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
HOXA1P49639 MYO1D-202ENST00000394649 5451 ntTSL 5 BASIC11.77□□□□□ -0.52
HOXA1P49639 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.52
HOXA1P49639 ZDHHC8-201ENST00000320602 3072 ntTSL 5 BASIC11.77□□□□□ -0.53
HOXA1P49639 PRKD1-201ENST00000331968 3726 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
HOXA1P49639 SFPQ-201ENST00000357214 3747 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HOXA1P49639 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
HOXA1P49639 AC139712.1-201ENST00000378256 1875 ntBASIC11.77□□□□□ -0.53
HOXA1P49639 WDR60-202ENST00000407559 3769 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HOXA1P49639 TMEM169-202ENST00000406027 3174 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HOXA1P49639 YWHAQ-202ENST00000381844 2216 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HOXA1P49639 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HOXA1P49639 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
HOXA1P49639 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HOXA1P49639 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC11.77□□□□□ -0.53
HOXA1P49639 CHCHD1-202ENST00000372837 1202 ntTSL 2 BASIC11.77□□□□□ -0.53
HOXA1P49639 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC11.77□□□□□ -0.53
HOXA1P49639 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC11.77□□□□□ -0.53
HOXA1P49639 HNRNPA1P40-201ENST00000426371 1278 ntBASIC11.77□□□□□ -0.53
HOXA1P49639 HMGN1P19-201ENST00000436976 333 ntBASIC11.77□□□□□ -0.53
HOXA1P49639 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC11.77□□□□□ -0.53
HOXA1P49639 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC11.77□□□□□ -0.53
HOXA1P49639 TMPRSS11CP-201ENST00000453277 683 ntBASIC11.77□□□□□ -0.53
HOXA1P49639 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HOXA1P49639 MLF1-209ENST00000482628 1050 ntTSL 5 BASIC11.77□□□□□ -0.53
HOXA1P49639 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC11.77□□□□□ -0.53
HOXA1P49639 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC11.77□□□□□ -0.53
HOXA1P49639 SORD2P-201ENST00000558556 1069 ntBASIC11.77□□□□□ -0.53
HOXA1P49639 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
HOXA1P49639 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC11.77□□□□□ -0.53
HOXA1P49639 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
HOXA1P49639 AC004466.1-201ENST00000599515 1080 ntBASIC11.77□□□□□ -0.53
HOXA1P49639 AC139530.3-201ENST00000620344 690 ntBASIC11.77□□□□□ -0.53
HOXA1P49639 AC005252.2-201ENST00000624630 1141 ntBASIC11.77□□□□□ -0.53
HOXA1P49639 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC11.77□□□□□ -0.53
HOXA1P49639 PLOD3-201ENST00000223127 2920 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
HOXA1P49639 AL583810.2-201ENST00000556430 3254 ntBASIC11.77□□□□□ -0.53
HOXA1P49639 FLJ30679-201ENST00000624773 1980 ntBASIC11.77□□□□□ -0.53
HOXA1P49639 MYLK-204ENST00000360304 7738 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
HOXA1P49639 ESYT1-202ENST00000394048 4388 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
HOXA1P49639 CMIP-202ENST00000537098 4357 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HOXA1P49639 CNTD1-204ENST00000588408 2369 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HOXA1P49639 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC11.77□□□□□ -0.53
HOXA1P49639 HNRNPA1P48-201ENST00000562726 1377 ntBASIC11.77□□□□□ -0.53
HOXA1P49639 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC11.77□□□□□ -0.53
HOXA1P49639 RTL10-201ENST00000328554 6619 ntAPPRIS P2 TSL 1 (best) BASIC11.77□□□□□ -0.53
HOXA1P49639 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HOXA1P49639 FAM212B-AS1-201ENST00000430373 2131 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
HOXA1P49639 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms