Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CIITAP33076 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
CIITAP33076 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
CIITAP33076 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CIITAP33076 CWC27-201ENST00000381070 2078 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CIITAP33076 MED11-201ENST00000293777 833 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CIITAP33076 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CIITAP33076 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CIITAP33076 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC15.73■□□□□ 0.11
CIITAP33076 Z69890.1-201ENST00000382990 339 ntBASIC15.73■□□□□ 0.11
CIITAP33076 KRTAP10-5-201ENST00000400372 1150 ntAPPRIS P1 BASIC15.73■□□□□ 0.11
CIITAP33076 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC15.73■□□□□ 0.11
CIITAP33076 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CIITAP33076 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC15.73■□□□□ 0.11
CIITAP33076 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC15.73■□□□□ 0.11
CIITAP33076 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC15.73■□□□□ 0.11
CIITAP33076 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CIITAP33076 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC15.73■□□□□ 0.11
CIITAP33076 AC117503.4-201ENST00000623229 1418 ntBASIC15.73■□□□□ 0.11
CIITAP33076 GGA1-201ENST00000325180 2528 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CIITAP33076 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CIITAP33076 RNF123-203ENST00000433785 1555 ntTSL 5 BASIC15.73■□□□□ 0.11
CIITAP33076 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CIITAP33076 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CIITAP33076 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
CIITAP33076 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CIITAP33076 AP3M2-202ENST00000396926 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CIITAP33076 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CIITAP33076 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CIITAP33076 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
CIITAP33076 IKBKG-208ENST00000611176 1654 ntTSL 2 BASIC15.73■□□□□ 0.11
CIITAP33076 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CIITAP33076 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
CIITAP33076 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC15.73■□□□□ 0.11
CIITAP33076 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CIITAP33076 LMAN2L-201ENST00000264963 2397 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
CIITAP33076 YWHAE-201ENST00000264335 2211 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CIITAP33076 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CIITAP33076 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CIITAP33076 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC15.72■□□□□ 0.11
CIITAP33076 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CIITAP33076 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CIITAP33076 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
CIITAP33076 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
CIITAP33076 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC15.72■□□□□ 0.11
CIITAP33076 MORN4-201ENST00000307450 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CIITAP33076 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CIITAP33076 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CIITAP33076 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
CIITAP33076 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC15.72■□□□□ 0.11
CIITAP33076 AC106827.1-201ENST00000366454 431 ntBASIC15.72■□□□□ 0.11
CIITAP33076 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CIITAP33076 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC15.72■□□□□ 0.11
CIITAP33076 TRBV7-3-201ENST00000390361 397 ntAPPRIS P1 BASIC15.72■□□□□ 0.11
CIITAP33076 MYL3-202ENST00000395869 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CIITAP33076 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
CIITAP33076 DKKL1P1-201ENST00000400550 698 ntBASIC15.72■□□□□ 0.11
CIITAP33076 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CIITAP33076 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC15.72■□□□□ 0.11
CIITAP33076 EFNA4-203ENST00000427683 1052 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
CIITAP33076 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CIITAP33076 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC15.72■□□□□ 0.11
CIITAP33076 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC15.72■□□□□ 0.11
CIITAP33076 RMDN1-218ENST00000523911 950 ntTSL 2 BASIC15.72■□□□□ 0.11
CIITAP33076 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CIITAP33076 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CIITAP33076 RN7SL357P-201ENST00000581065 298 ntBASIC15.72■□□□□ 0.11
CIITAP33076 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC15.72■□□□□ 0.11
CIITAP33076 AC011491.1-203ENST00000637688 543 ntBASIC15.72■□□□□ 0.11
CIITAP33076 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CIITAP33076 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
CIITAP33076 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC15.72■□□□□ 0.11
CIITAP33076 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC15.72■□□□□ 0.11
CIITAP33076 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
CIITAP33076 CPA5-206ENST00000474905 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CIITAP33076 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC15.72■□□□□ 0.11
CIITAP33076 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CIITAP33076 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
CIITAP33076 GFRA1-201ENST00000355422 2583 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
CIITAP33076 SMYD5-202ENST00000389501 2593 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CIITAP33076 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CIITAP33076 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
CIITAP33076 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
CIITAP33076 EDN1-201ENST00000379375 2033 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
CIITAP33076 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC15.72■□□□□ 0.11
CIITAP33076 MAGEH1-201ENST00000342972 1462 ntAPPRIS P1 BASIC15.71■□□□□ 0.11
CIITAP33076 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CIITAP33076 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CIITAP33076 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CIITAP33076 FAM90A12P-201ENST00000519497 2375 ntBASIC15.71■□□□□ 0.11
CIITAP33076 FAM90A24P-201ENST00000520792 2369 ntBASIC15.71■□□□□ 0.11
CIITAP33076 AC020917.4-201ENST00000623994 1999 ntBASIC15.71■□□□□ 0.11
CIITAP33076 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CIITAP33076 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
CIITAP33076 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
CIITAP33076 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.11
CIITAP33076 FTSJ1-203ENST00000396894 1669 ntTSL 2 BASIC15.71■□□□□ 0.11
CIITAP33076 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CIITAP33076 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
CIITAP33076 AC245140.2-201ENST00000624054 1939 ntBASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms