Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 WFDC3-201ENST00000243938 1000 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL5A1P20908 GAST-201ENST00000329402 470 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL5A1P20908 FTHL17-201ENST00000359202 813 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
COL5A1P20908 TXLNGY-202ENST00000407724 1000 ntTSL 3 BASIC13.06□□□□□ -0.32
COL5A1P20908 AC231533.1-201ENST00000416061 925 ntTSL 3 BASIC13.06□□□□□ -0.32
COL5A1P20908 SNRPCP15-201ENST00000424055 192 ntBASIC13.06□□□□□ -0.32
COL5A1P20908 OR52V1P-201ENST00000515557 898 ntBASIC13.06□□□□□ -0.32
COL5A1P20908 GMFG-206ENST00000597595 758 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL5A1P20908 AC010503.4-201ENST00000615487 688 ntBASIC13.06□□□□□ -0.32
COL5A1P20908 ZNF251-201ENST00000292562 2807 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
COL5A1P20908 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC13.06□□□□□ -0.32
COL5A1P20908 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC13.06□□□□□ -0.32
COL5A1P20908 CHMP5-202ENST00000419016 1957 ntTSL 2 BASIC13.06□□□□□ -0.32
COL5A1P20908 AC040160.2-201ENST00000623816 1675 ntBASIC13.06□□□□□ -0.32
COL5A1P20908 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL5A1P20908 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL5A1P20908 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL5A1P20908 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL5A1P20908 TTC23L-203ENST00000505624 1353 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL5A1P20908 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL5A1P20908 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL5A1P20908 USP28-214ENST00000545540 3431 ntTSL 2 BASIC13.05□□□□□ -0.32
COL5A1P20908 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC13.05□□□□□ -0.32
COL5A1P20908 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC13.05□□□□□ -0.32
COL5A1P20908 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL5A1P20908 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL5A1P20908 CLEC10A-202ENST00000416562 1646 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
COL5A1P20908 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL5A1P20908 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL5A1P20908 C19orf33-201ENST00000301246 467 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL5A1P20908 ARAF-202ENST00000377039 1271 ntTSL 2 BASIC13.05□□□□□ -0.32
COL5A1P20908 AC103563.2-201ENST00000442200 597 ntTSL 5 BASIC13.05□□□□□ -0.32
COL5A1P20908 LINC01875-201ENST00000454477 660 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL5A1P20908 TSTD1-206ENST00000466967 477 ntTSL 2 BASIC13.05□□□□□ -0.32
COL5A1P20908 CXXC1P1-202ENST00000489409 1212 ntBASIC13.05□□□□□ -0.32
COL5A1P20908 IMMP1L-213ENST00000533642 314 ntTSL 2 BASIC13.05□□□□□ -0.32
COL5A1P20908 AC002996.1-201ENST00000546840 784 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
COL5A1P20908 BLOC1S1-203ENST00000548925 571 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL5A1P20908 RBMX-209ENST00000565438 1292 ntTSL 5 BASIC13.05□□□□□ -0.32
COL5A1P20908 SEPT4-AS1-203ENST00000580769 1000 ntTSL 3 BASIC13.05□□□□□ -0.32
COL5A1P20908 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
COL5A1P20908 Metazoa_SRP.173-201ENST00000614020 273 ntBASIC13.05□□□□□ -0.32
COL5A1P20908 LINC00969-321ENST00000629990 806 ntTSL 5 BASIC13.05□□□□□ -0.32
COL5A1P20908 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL5A1P20908 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC13.05□□□□□ -0.32
COL5A1P20908 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL5A1P20908 KRT26-201ENST00000335552 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL5A1P20908 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
COL5A1P20908 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC13.05□□□□□ -0.32
COL5A1P20908 PGAP2-204ENST00000396991 1798 ntTSL 5 BASIC13.05□□□□□ -0.32
COL5A1P20908 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL5A1P20908 AC007686.3-201ENST00000619017 3487 ntBASIC13.05□□□□□ -0.32
COL5A1P20908 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL5A1P20908 RXRG-201ENST00000359842 2041 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL5A1P20908 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL5A1P20908 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL5A1P20908 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL5A1P20908 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
COL5A1P20908 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL5A1P20908 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL5A1P20908 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
COL5A1P20908 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC13.04□□□□□ -0.32
COL5A1P20908 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL5A1P20908 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC13.04□□□□□ -0.32
COL5A1P20908 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL5A1P20908 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL5A1P20908 CSRP2-201ENST00000311083 943 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL5A1P20908 SLC35A2-203ENST00000376515 1044 ntTSL 3 BASIC13.04□□□□□ -0.32
COL5A1P20908 KCNK15-AS1-202ENST00000427303 528 ntTSL 5 BASIC13.04□□□□□ -0.32
COL5A1P20908 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC13.04□□□□□ -0.32
COL5A1P20908 AC006328.1-201ENST00000437571 379 ntBASIC13.04□□□□□ -0.32
COL5A1P20908 PLA2G15-203ENST00000444212 943 ntTSL 2 BASIC13.04□□□□□ -0.32
COL5A1P20908 CSRP2-203ENST00000547435 632 ntTSL 2 BASIC13.04□□□□□ -0.32
COL5A1P20908 AP001462.1-201ENST00000594089 452 ntBASIC13.04□□□□□ -0.32
COL5A1P20908 AC092327.2-201ENST00000595705 901 ntTSL 3 BASIC13.04□□□□□ -0.32
COL5A1P20908 COG6-212ENST00000630730 186 ntTSL 5 BASIC13.04□□□□□ -0.32
COL5A1P20908 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL5A1P20908 ECI2-207ENST00000465828 1548 ntTSL 5 BASIC13.04□□□□□ -0.32
COL5A1P20908 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
COL5A1P20908 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL5A1P20908 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL5A1P20908 OR6D1P-202ENST00000641007 5290 ntBASIC13.04□□□□□ -0.32
COL5A1P20908 CASK-202ENST00000378158 3848 ntTSL 5 BASIC13.04□□□□□ -0.32
COL5A1P20908 AC034205.3-201ENST00000603595 1376 ntBASIC13.04□□□□□ -0.32
COL5A1P20908 BANP-203ENST00000393207 2438 ntTSL 2 BASIC13.04□□□□□ -0.32
COL5A1P20908 HIST2H2BE-201ENST00000369155 2194 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
COL5A1P20908 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL5A1P20908 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL5A1P20908 AC111170.3-201ENST00000624282 2464 ntBASIC13.04□□□□□ -0.32
COL5A1P20908 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
COL5A1P20908 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL5A1P20908 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL5A1P20908 UBE2V1-222ENST00000557021 2258 ntTSL 5 BASIC13.04□□□□□ -0.32
COL5A1P20908 AAR2-203ENST00000397286 1466 ntTSL 5 BASIC13.04□□□□□ -0.32
COL5A1P20908 FAM133B-204ENST00000445716 2026 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL5A1P20908 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
COL5A1P20908 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL5A1P20908 XRN1-203ENST00000463916 2075 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
COL5A1P20908 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL5A1P20908 FAM153C-201ENST00000398106 1510 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms