Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB1P09429 GOLGA8IP-201ENST00000340249 1899 ntTSL 2 BASIC16.57■□□□□ 0.24
HMGB1P09429 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB1P09429 ZCCHC17-201ENST00000344147 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB1P09429 KRTAP10-4-201ENST00000400374 1643 ntAPPRIS P2 BASIC16.57■□□□□ 0.24
HMGB1P09429 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB1P09429 AC087386.2-201ENST00000623212 4637 ntBASIC16.57■□□□□ 0.24
HMGB1P09429 KDM2B-202ENST00000377071 4595 ntAPPRIS P4 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB1P09429 OARD1-203ENST00000463088 1515 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
HMGB1P09429 AL133338.1-201ENST00000565695 1517 ntBASIC16.57■□□□□ 0.24
HMGB1P09429 AF013593.1-201ENST00000458074 1487 ntBASIC16.57■□□□□ 0.24
HMGB1P09429 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB1P09429 ZNF333-209ENST00000601134 1392 ntTSL 5 BASIC16.57■□□□□ 0.24
HMGB1P09429 AC020907.1-201ENST00000616460 1350 ntBASIC16.57■□□□□ 0.24
HMGB1P09429 KNDC1-201ENST00000304613 6793 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB1P09429 APOD-201ENST00000343267 1130 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB1P09429 NUDT2-201ENST00000346365 960 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB1P09429 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC16.57■□□□□ 0.24
HMGB1P09429 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC16.57■□□□□ 0.24
HMGB1P09429 AC254562.2-201ENST00000428786 667 ntTSL 3 BASIC16.57■□□□□ 0.24
HMGB1P09429 NAGK-204ENST00000443872 878 ntTSL 3 BASIC16.57■□□□□ 0.24
HMGB1P09429 RN7SL258P-201ENST00000478664 300 ntBASIC16.57■□□□□ 0.24
HMGB1P09429 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC16.57■□□□□ 0.24
HMGB1P09429 HOXA10-AS-202ENST00000519935 1161 ntTSL 3 BASIC16.57■□□□□ 0.24
HMGB1P09429 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC16.57■□□□□ 0.24
HMGB1P09429 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
HMGB1P09429 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
HMGB1P09429 AL161670.2-201ENST00000557650 1227 ntBASIC16.57■□□□□ 0.24
HMGB1P09429 AL356740.1-201ENST00000602192 1297 ntBASIC16.57■□□□□ 0.24
HMGB1P09429 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
HMGB1P09429 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC16.57■□□□□ 0.24
HMGB1P09429 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC16.57■□□□□ 0.24
HMGB1P09429 USP3-204ENST00000540797 5474 ntTSL 2 BASIC16.57■□□□□ 0.24
HMGB1P09429 SLC52A1-203ENST00000512825 2989 ntTSL 2 BASIC16.57■□□□□ 0.24
HMGB1P09429 AC073869.1-201ENST00000415574 2762 ntBASIC16.57■□□□□ 0.24
HMGB1P09429 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB1P09429 ATP5J2-PTCD1-201ENST00000413834 2491 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
HMGB1P09429 CCNC-210ENST00000520429 2473 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB1P09429 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC16.57■□□□□ 0.24
HMGB1P09429 TSPEAR-AS2-202ENST00000354333 2422 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB1P09429 TSC22D3-204ENST00000372384 2199 ntTSL 2 BASIC16.57■□□□□ 0.24
HMGB1P09429 CNN2-202ENST00000348419 2033 ntTSL 2 BASIC16.57■□□□□ 0.24
HMGB1P09429 TCOF1-207ENST00000504761 4467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
HMGB1P09429 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC16.56■□□□□ 0.24
HMGB1P09429 Z98885.3-201ENST00000624882 1757 ntBASIC16.56■□□□□ 0.24
HMGB1P09429 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB1P09429 AC108024.1-201ENST00000626286 1721 ntBASIC16.56■□□□□ 0.24
HMGB1P09429 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
HMGB1P09429 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB1P09429 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB1P09429 PLEKHB2-205ENST00000409279 2488 ntAPPRIS ALT1 TSL 2 BASIC16.56■□□□□ 0.24
HMGB1P09429 AC020658.7-201ENST00000624274 2442 ntBASIC16.56■□□□□ 0.24
HMGB1P09429 KRT8P31-201ENST00000504812 1408 ntBASIC16.56■□□□□ 0.24
HMGB1P09429 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB1P09429 MAP7D2-204ENST00000452324 2233 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
HMGB1P09429 KRT18P9-201ENST00000604826 1300 ntBASIC16.56■□□□□ 0.24
HMGB1P09429 PPP3R1-201ENST00000234310 3023 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB1P09429 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB1P09429 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB1P09429 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB1P09429 MIR769-201ENST00000390225 118 ntBASIC16.56■□□□□ 0.24
HMGB1P09429 AL589935.1-203ENST00000412751 465 ntTSL 3 BASIC16.56■□□□□ 0.24
HMGB1P09429 DEF8-202ENST00000418391 852 ntTSL 2 BASIC16.56■□□□□ 0.24
HMGB1P09429 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC16.56■□□□□ 0.24
HMGB1P09429 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC16.56■□□□□ 0.24
HMGB1P09429 PACS1-203ENST00000524815 628 ntTSL 4 BASIC16.56■□□□□ 0.24
HMGB1P09429 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
HMGB1P09429 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC16.56■□□□□ 0.24
HMGB1P09429 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC16.56■□□□□ 0.24
HMGB1P09429 PRSS16-203ENST00000421826 1949 ntTSL 2 BASIC16.56■□□□□ 0.24
HMGB1P09429 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB1P09429 LINC01341-202ENST00000421003 2600 ntTSL 2 BASIC16.56■□□□□ 0.24
HMGB1P09429 SYBU-217ENST00000528331 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB1P09429 AL591122.2-201ENST00000624125 1853 ntBASIC16.56■□□□□ 0.24
HMGB1P09429 STK40-201ENST00000359297 4837 ntTSL 2 BASIC16.56■□□□□ 0.24
HMGB1P09429 TLE1-203ENST00000376499 3893 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB1P09429 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB1P09429 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB1P09429 CDC20B-202ENST00000322374 1679 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB1P09429 KDM8-212ENST00000568965 1655 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB1P09429 ADAM15-203ENST00000356955 2949 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB1P09429 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB1P09429 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
HMGB1P09429 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC16.55■□□□□ 0.24
HMGB1P09429 UGGT2-201ENST00000376712 2240 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB1P09429 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
HMGB1P09429 CREB3L4-204ENST00000368603 1557 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB1P09429 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB1P09429 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC16.55■□□□□ 0.24
HMGB1P09429 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC16.55■□□□□ 0.24
HMGB1P09429 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
HMGB1P09429 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC16.55■□□□□ 0.24
HMGB1P09429 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC16.55■□□□□ 0.24
HMGB1P09429 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB1P09429 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC16.55■□□□□ 0.24
HMGB1P09429 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC16.55■□□□□ 0.24
HMGB1P09429 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
HMGB1P09429 MIR645-201ENST00000385283 94 ntBASIC16.55■□□□□ 0.24
HMGB1P09429 ACTG1P2-201ENST00000415776 1125 ntBASIC16.55■□□□□ 0.24
HMGB1P09429 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC16.55■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms