Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
ERCC4Q92889 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ERCC4Q92889 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC16.03■□□□□ 0.16
ERCC4Q92889 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC16.03■□□□□ 0.16
ERCC4Q92889 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
ERCC4Q92889 AP000812.2-201ENST00000538934 718 ntBASIC16.03■□□□□ 0.16
ERCC4Q92889 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC16.03■□□□□ 0.16
ERCC4Q92889 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ERCC4Q92889 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC16.03■□□□□ 0.16
ERCC4Q92889 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC16.03■□□□□ 0.16
ERCC4Q92889 AC124068.2-202ENST00000562356 612 ntTSL 3 BASIC16.03■□□□□ 0.16
ERCC4Q92889 AC124068.2-201ENST00000569473 1109 ntBASIC16.03■□□□□ 0.16
ERCC4Q92889 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
ERCC4Q92889 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
ERCC4Q92889 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC16.03■□□□□ 0.16
ERCC4Q92889 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC16.03■□□□□ 0.16
ERCC4Q92889 PLCD4-202ENST00000417849 2738 ntAPPRIS P2 TSL 5 BASIC16.03■□□□□ 0.16
ERCC4Q92889 AL359845.1-201ENST00000458202 1648 ntBASIC16.03■□□□□ 0.16
ERCC4Q92889 TOLLIP-203ENST00000525159 3429 ntTSL 2 BASIC16.03■□□□□ 0.16
ERCC4Q92889 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ERCC4Q92889 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
ERCC4Q92889 LILRA1-201ENST00000251372 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ERCC4Q92889 SON-203ENST00000381679 7860 ntTSL 5 BASIC16.03■□□□□ 0.16
ERCC4Q92889 AC108002.1-201ENST00000520572 5684 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ERCC4Q92889 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ERCC4Q92889 AC016245.1-201ENST00000570335 3204 ntTSL 2 BASIC16.03■□□□□ 0.16
ERCC4Q92889 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC16.03■□□□□ 0.16
ERCC4Q92889 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
ERCC4Q92889 PCDHA5-203ENST00000614258 4248 ntBASIC16.03■□□□□ 0.16
ERCC4Q92889 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
ERCC4Q92889 ADGRA1-201ENST00000392606 3438 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ERCC4Q92889 WIZ-202ENST00000389282 4067 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
ERCC4Q92889 DYRK1B-202ENST00000348817 2448 ntTSL 5 BASIC16.03■□□□□ 0.16
ERCC4Q92889 PLSCR1-214ENST00000487389 1443 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
ERCC4Q92889 AAR2-202ENST00000373932 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
ERCC4Q92889 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
ERCC4Q92889 VILL-201ENST00000283713 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
ERCC4Q92889 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC16.02■□□□□ 0.16
ERCC4Q92889 ADGRG6-202ENST00000296932 6849 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
ERCC4Q92889 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
ERCC4Q92889 SRRM1-201ENST00000323848 4011 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
ERCC4Q92889 SLC9A3P3-201ENST00000457608 2229 ntBASIC16.02■□□□□ 0.16
ERCC4Q92889 HPCAL4-201ENST00000372844 4856 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
ERCC4Q92889 LINC00115-201ENST00000473798 1317 ntBASIC16.02■□□□□ 0.16
ERCC4Q92889 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
ERCC4Q92889 CAMKV-209ENST00000477224 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
ERCC4Q92889 XRCC6-201ENST00000359308 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
ERCC4Q92889 CREB3L4-204ENST00000368603 1557 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
ERCC4Q92889 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
ERCC4Q92889 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC16.02■□□□□ 0.16
ERCC4Q92889 SLC45A1-201ENST00000289877 2401 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
ERCC4Q92889 ANKRD19P-201ENST00000338192 862 ntBASIC16.02■□□□□ 0.16
ERCC4Q92889 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
ERCC4Q92889 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
ERCC4Q92889 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC16.02■□□□□ 0.16
ERCC4Q92889 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC16.02■□□□□ 0.16
ERCC4Q92889 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
ERCC4Q92889 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
ERCC4Q92889 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC16.02■□□□□ 0.16
ERCC4Q92889 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
ERCC4Q92889 AK2P2-201ENST00000439142 405 ntBASIC16.02■□□□□ 0.16
ERCC4Q92889 RPL7P3-201ENST00000441388 714 ntBASIC16.02■□□□□ 0.16
ERCC4Q92889 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC16.02■□□□□ 0.16
ERCC4Q92889 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
ERCC4Q92889 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
ERCC4Q92889 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
ERCC4Q92889 NCK2-206ENST00000522586 490 ntTSL 5 BASIC16.02■□□□□ 0.16
ERCC4Q92889 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC16.02■□□□□ 0.16
ERCC4Q92889 CCDC86-203ENST00000545580 697 ntAPPRIS ALT2 TSL 3 BASIC16.02■□□□□ 0.16
ERCC4Q92889 APRT-204ENST00000563655 709 ntTSL 5 BASIC16.02■□□□□ 0.16
ERCC4Q92889 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC16.02■□□□□ 0.16
ERCC4Q92889 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC16.02■□□□□ 0.16
ERCC4Q92889 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC16.02■□□□□ 0.16
ERCC4Q92889 AP3M2-202ENST00000396926 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
ERCC4Q92889 EML1-203ENST00000334192 4064 ntTSL 5 BASIC16.02■□□□□ 0.16
ERCC4Q92889 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC16.02■□□□□ 0.15
ERCC4Q92889 CPEB1-213ENST00000617462 2068 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
ERCC4Q92889 SLC46A1-208ENST00000618626 5363 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
ERCC4Q92889 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC16.02■□□□□ 0.15
ERCC4Q92889 SRGAP3-201ENST00000360413 8415 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
ERCC4Q92889 EIF4G1-219ENST00000435046 4668 ntTSL 5 BASIC16.02■□□□□ 0.15
ERCC4Q92889 AFF3-201ENST00000317233 8135 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
ERCC4Q92889 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
ERCC4Q92889 DLGAP1-AS1-201ENST00000317114 1966 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
ERCC4Q92889 IFT172-202ENST00000359466 2207 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
ERCC4Q92889 SNX19-213ENST00000534726 1656 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
ERCC4Q92889 AC144522.1-201ENST00000625111 1658 ntBASIC16.02■□□□□ 0.15
ERCC4Q92889 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
ERCC4Q92889 MEGF11-201ENST00000288745 5707 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
ERCC4Q92889 FAM201A-201ENST00000377680 3437 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
ERCC4Q92889 HMGCL-203ENST00000374490 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
ERCC4Q92889 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
ERCC4Q92889 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
ERCC4Q92889 TCP11L1-209ENST00000531632 1898 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
ERCC4Q92889 ANKZF1-201ENST00000323348 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
ERCC4Q92889 MTMR11-201ENST00000369140 2324 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
ERCC4Q92889 ZNF384-204ENST00000396801 3008 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
ERCC4Q92889 NSD2-204ENST00000382891 7534 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
ERCC4Q92889 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
ERCC4Q92889 YTHDF3-209ENST00000617200 5076 ntTSL 5 BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms