Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AL645608.7-201ENST00000607769 351 ntTSL 4 BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 AC140479.7-201ENST00000636301 2332 ntBASIC13.6□□□□□ -0.23
COL28A1Q2UY09 GABRG3-208ENST00000615808 10768 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 TMEM51-204ENST00000428417 1942 ntAPPRIS P1 TSL 3 BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 AC112229.3-201ENST00000603767 3202 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 AC013271.1-201ENST00000640669 3202 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 RNF157-AS1-204ENST00000590137 1812 ntTSL 2 BASIC13.6□□□□□ -0.23
COL28A1Q2UY09 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 MAPKBP1-215ENST00000514566 5394 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 AC027612.1-201ENST00000445234 2395 ntBASIC13.59□□□□□ -0.23
COL28A1Q2UY09 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 KLHL25-201ENST00000337975 3758 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 AC013460.1-202ENST00000435062 2253 ntTSL 2 BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 AC108734.2-201ENST00000420887 1069 ntBASIC13.59□□□□□ -0.23
COL28A1Q2UY09 IGLV9-49-201ENST00000427632 409 ntAPPRIS P1 BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 XBP1P1-201ENST00000436573 652 ntBASIC13.59□□□□□ -0.23
COL28A1Q2UY09 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 AL512622.1-202ENST00000443922 478 ntTSL 3 BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 GNG10P1-201ENST00000452289 199 ntBASIC13.59□□□□□ -0.23
COL28A1Q2UY09 IGKV1OR-2-201ENST00000457995 350 ntBASIC13.59□□□□□ -0.23
COL28A1Q2UY09 CASP3-205ENST00000517513 964 ntTSL 5 BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 AC131206.1-201ENST00000538078 1211 ntBASIC13.59□□□□□ -0.23
COL28A1Q2UY09 AC140847.2-201ENST00000545923 501 ntTSL 3 BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 NR4A1-209ENST00000548232 1101 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 MYL6-218ENST00000550697 901 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 AC027601.3-201ENST00000622907 509 ntBASIC13.59□□□□□ -0.23
COL28A1Q2UY09 CR392039.1-201ENST00000623217 204 ntBASIC13.59□□□□□ -0.23
COL28A1Q2UY09 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 INTS11-204ENST00000421495 1868 ntTSL 2 BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 COL6A4P2-202ENST00000504443 2753 ntBASIC13.59□□□□□ -0.23
COL28A1Q2UY09 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC13.59□□□□□ -0.23
COL28A1Q2UY09 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.23
COL28A1Q2UY09 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC13.58□□□□□ -0.23
COL28A1Q2UY09 AL136172.1-201ENST00000598590 1394 ntBASIC13.58□□□□□ -0.23
COL28A1Q2UY09 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.23
COL28A1Q2UY09 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.23
COL28A1Q2UY09 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC13.58□□□□□ -0.23
COL28A1Q2UY09 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.23
COL28A1Q2UY09 PLXNB3-209ENST00000538966 6377 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.23
COL28A1Q2UY09 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
COL28A1Q2UY09 BNIP3-201ENST00000368636 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
COL28A1Q2UY09 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC13.58□□□□□ -0.23
COL28A1Q2UY09 TPM3-205ENST00000328159 1771 ntTSL 2 BASIC13.58□□□□□ -0.23
COL28A1Q2UY09 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
COL28A1Q2UY09 GALC-206ENST00000544807 2528 ntTSL 2 BASIC13.58□□□□□ -0.23
COL28A1Q2UY09 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 GALNT3-201ENST00000392701 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 ACKR3-201ENST00000272928 2203 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
COL28A1Q2UY09 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC13.58□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms