Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC12.59□□□□□ -0.39
H3F3AP84243 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC12.59□□□□□ -0.39
H3F3AP84243 SPRY4-AS1-203ENST00000443800 566 ntTSL 3 BASIC12.59□□□□□ -0.39
H3F3AP84243 AC022494.1-201ENST00000466044 728 ntBASIC12.59□□□□□ -0.39
H3F3AP84243 RN7SL67P-201ENST00000492147 296 ntBASIC12.59□□□□□ -0.39
H3F3AP84243 SUPT4H1P2-201ENST00000501248 353 ntBASIC12.59□□□□□ -0.39
H3F3AP84243 SLC25A15P3-201ENST00000505530 290 ntBASIC12.59□□□□□ -0.39
H3F3AP84243 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
H3F3AP84243 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
H3F3AP84243 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
H3F3AP84243 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
H3F3AP84243 IGHV3OR16-16-201ENST00000563644 343 ntBASIC12.59□□□□□ -0.39
H3F3AP84243 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC12.59□□□□□ -0.39
H3F3AP84243 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
H3F3AP84243 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
H3F3AP84243 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC12.59□□□□□ -0.39
H3F3AP84243 CDK7-214ENST00000626796 358 ntTSL 5 BASIC12.59□□□□□ -0.39
H3F3AP84243 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC12.59□□□□□ -0.39
H3F3AP84243 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
H3F3AP84243 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC12.59□□□□□ -0.39
H3F3AP84243 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC12.59□□□□□ -0.39
H3F3AP84243 USP40-208ENST00000450966 5616 ntAPPRIS P2 TSL 1 (best) BASIC12.59□□□□□ -0.39
H3F3AP84243 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
H3F3AP84243 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC12.59□□□□□ -0.39
H3F3AP84243 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
H3F3AP84243 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC12.59□□□□□ -0.39
H3F3AP84243 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
H3F3AP84243 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
H3F3AP84243 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
H3F3AP84243 GIT1-211ENST00000581348 2827 ntAPPRIS ALT2 TSL 2 BASIC12.59□□□□□ -0.39
H3F3AP84243 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC12.59□□□□□ -0.39
H3F3AP84243 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC12.59□□□□□ -0.39
H3F3AP84243 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC12.59□□□□□ -0.39
H3F3AP84243 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
H3F3AP84243 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC12.59□□□□□ -0.39
H3F3AP84243 OGFOD3-201ENST00000313056 4287 ntAPPRIS P1 TSL 2 BASIC12.59□□□□□ -0.39
H3F3AP84243 KRT8P43-201ENST00000406052 1458 ntBASIC12.59□□□□□ -0.39
H3F3AP84243 AC004554.1-201ENST00000422830 1468 ntBASIC12.59□□□□□ -0.39
H3F3AP84243 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC12.59□□□□□ -0.39
H3F3AP84243 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC12.59□□□□□ -0.39
H3F3AP84243 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC12.58□□□□□ -0.39
H3F3AP84243 LIPA-202ENST00000336233 2782 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
H3F3AP84243 ZFYVE27-202ENST00000357540 2765 ntTSL 2 BASIC12.58□□□□□ -0.39
H3F3AP84243 ZFYVE27-204ENST00000370610 2769 ntTSL 2 BASIC12.58□□□□□ -0.39
H3F3AP84243 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.39
H3F3AP84243 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC12.58□□□□□ -0.39
H3F3AP84243 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
H3F3AP84243 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
H3F3AP84243 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
H3F3AP84243 SLC20A2-208ENST00000520262 2992 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
H3F3AP84243 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
H3F3AP84243 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
H3F3AP84243 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
H3F3AP84243 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC12.58□□□□□ -0.4
H3F3AP84243 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
H3F3AP84243 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
H3F3AP84243 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
H3F3AP84243 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC12.58□□□□□ -0.4
H3F3AP84243 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
H3F3AP84243 C1QA-202ENST00000402322 976 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
H3F3AP84243 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
H3F3AP84243 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC12.58□□□□□ -0.4
H3F3AP84243 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC12.58□□□□□ -0.4
H3F3AP84243 AL356753.1-201ENST00000427035 2018 ntTSL 2 BASIC12.58□□□□□ -0.4
H3F3AP84243 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC12.58□□□□□ -0.4
H3F3AP84243 MARK2P9-201ENST00000430958 1727 ntBASIC12.58□□□□□ -0.4
H3F3AP84243 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC12.58□□□□□ -0.4
H3F3AP84243 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC12.58□□□□□ -0.4
H3F3AP84243 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
H3F3AP84243 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
H3F3AP84243 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC12.58□□□□□ -0.4
H3F3AP84243 AC245884.6-201ENST00000515672 1067 ntBASIC12.58□□□□□ -0.4
H3F3AP84243 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC12.58□□□□□ -0.4
H3F3AP84243 AC012322.1-201ENST00000561657 861 ntTSL 3 BASIC12.58□□□□□ -0.4
H3F3AP84243 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC12.58□□□□□ -0.4
H3F3AP84243 MIR3677-201ENST00000578964 60 ntBASIC12.58□□□□□ -0.4
H3F3AP84243 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC12.58□□□□□ -0.4
H3F3AP84243 ZNF286A-219ENST00000585194 607 ntTSL 4 BASIC12.58□□□□□ -0.4
H3F3AP84243 SIGLEC18P-201ENST00000602271 909 ntBASIC12.58□□□□□ -0.4
H3F3AP84243 AL591122.2-201ENST00000624125 1853 ntBASIC12.58□□□□□ -0.4
H3F3AP84243 AC006453.1-201ENST00000636037 1257 ntBASIC12.58□□□□□ -0.4
H3F3AP84243 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC12.58□□□□□ -0.4
H3F3AP84243 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
H3F3AP84243 TTLL4-212ENST00000457313 3723 ntTSL 2 BASIC12.58□□□□□ -0.4
H3F3AP84243 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
H3F3AP84243 NFATC1-205ENST00000427363 2832 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
H3F3AP84243 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
H3F3AP84243 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
H3F3AP84243 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
H3F3AP84243 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
H3F3AP84243 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC12.58□□□□□ -0.4
H3F3AP84243 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC12.58□□□□□ -0.4
H3F3AP84243 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
H3F3AP84243 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC12.58□□□□□ -0.4
H3F3AP84243 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
H3F3AP84243 CDK5RAP1-202ENST00000346416 2122 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
H3F3AP84243 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC12.58□□□□□ -0.4
H3F3AP84243 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC12.58□□□□□ -0.4
H3F3AP84243 EIF5-202ENST00000392715 3417 ntAPPRIS P1 TSL 1 (best) BASIC12.58□□□□□ -0.4
H3F3AP84243 ARMC8-213ENST00000470821 1656 ntTSL 5 BASIC12.57□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms