Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 PAG1-201ENST00000220597 10744 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
MRE11P49959 GRM1-202ENST00000355289 3874 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
MRE11P49959 AHI1-201ENST00000265602 4335 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
MRE11P49959 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
MRE11P49959 NDRG4-201ENST00000258187 3324 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
MRE11P49959 AC022364.1-202ENST00000617468 2409 ntBASIC16.55■□□□□ 0.24
MRE11P49959 GPR107-208ENST00000610997 2813 ntTSL 5 BASIC16.55■□□□□ 0.24
MRE11P49959 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
MRE11P49959 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
MRE11P49959 HPS3-201ENST00000296051 4665 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MRE11P49959 TRPM4-202ENST00000427978 3444 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
MRE11P49959 CAND2-204ENST00000456430 4573 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MRE11P49959 CAPN1-202ENST00000524773 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MRE11P49959 PRKD1-201ENST00000331968 3726 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
MRE11P49959 L3MBTL1-203ENST00000373135 3218 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
MRE11P49959 TRPM5-201ENST00000155858 3929 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
MRE11P49959 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC16.54■□□□□ 0.24
MRE11P49959 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
MRE11P49959 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
MRE11P49959 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
MRE11P49959 BLCAP-204ENST00000397135 685 ntAPPRIS P1 TSL 4 BASIC16.54■□□□□ 0.24
MRE11P49959 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC16.54■□□□□ 0.24
MRE11P49959 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
MRE11P49959 TLE1P1-201ENST00000422965 589 ntBASIC16.54■□□□□ 0.24
MRE11P49959 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC16.54■□□□□ 0.24
MRE11P49959 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
MRE11P49959 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC16.54■□□□□ 0.24
MRE11P49959 AP001258.2-201ENST00000529891 490 ntBASIC16.54■□□□□ 0.24
MRE11P49959 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
MRE11P49959 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC16.54■□□□□ 0.24
MRE11P49959 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
MRE11P49959 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
MRE11P49959 AC010319.3-201ENST00000597028 470 ntBASIC16.54■□□□□ 0.24
MRE11P49959 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC16.54■□□□□ 0.24
MRE11P49959 AC091271.1-201ENST00000611877 1162 ntBASIC16.54■□□□□ 0.24
MRE11P49959 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC16.54■□□□□ 0.24
MRE11P49959 ZNF100-201ENST00000305570 2283 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
MRE11P49959 SCNN1B-202ENST00000343070 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MRE11P49959 NXPE3-201ENST00000273347 3941 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MRE11P49959 RIC8B-201ENST00000355478 3207 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
MRE11P49959 COL1A2-213ENST00000620463 4523 ntTSL 5 BASIC16.54■□□□□ 0.24
MRE11P49959 KCNMA1-232ENST00000638306 3811 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
MRE11P49959 DPP8-204ENST00000358939 2822 ntTSL 2 BASIC16.54■□□□□ 0.24
MRE11P49959 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MRE11P49959 POTEB3-201ENST00000611217 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MRE11P49959 GHITM-201ENST00000372134 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MRE11P49959 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
MRE11P49959 HNRNPH1-216ENST00000510411 2105 ntTSL 5 BASIC16.54■□□□□ 0.24
MRE11P49959 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
MRE11P49959 CSNK1G1-205ENST00000607537 2083 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
MRE11P49959 CPN2-201ENST00000323830 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
MRE11P49959 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MRE11P49959 PAM-203ENST00000346918 3302 ntTSL 5 BASIC16.53■□□□□ 0.24
MRE11P49959 GRIA4-210ENST00000527669 2647 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MRE11P49959 GTPBP4-202ENST00000360803 5075 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MRE11P49959 RTL5-202ENST00000609883 4105 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
MRE11P49959 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MRE11P49959 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MRE11P49959 ZNF124-202ENST00000472531 2243 ntTSL 2 BASIC16.53■□□□□ 0.24
MRE11P49959 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC16.53■□□□□ 0.24
MRE11P49959 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MRE11P49959 CTDP1-202ENST00000299543 3380 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
MRE11P49959 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC16.53■□□□□ 0.24
MRE11P49959 RPS15A-213ENST00000576436 2190 ntTSL 4 BASIC16.53■□□□□ 0.24
MRE11P49959 CYTH1-203ENST00000585509 3315 ntTSL 5 BASIC16.53■□□□□ 0.24
MRE11P49959 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MRE11P49959 NR1H3-217ENST00000467728 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MRE11P49959 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC16.53■□□□□ 0.24
MRE11P49959 TNFRSF21-201ENST00000296861 3595 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MRE11P49959 AL645937.2-201ENST00000396808 931 ntBASIC16.53■□□□□ 0.24
MRE11P49959 AL021707.3-201ENST00000418803 527 ntTSL 5 BASIC16.53■□□□□ 0.24
MRE11P49959 AC098850.1-201ENST00000419919 790 ntBASIC16.53■□□□□ 0.24
MRE11P49959 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC16.53■□□□□ 0.24
MRE11P49959 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MRE11P49959 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC16.53■□□□□ 0.24
MRE11P49959 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC16.53■□□□□ 0.24
MRE11P49959 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC16.53■□□□□ 0.24
MRE11P49959 RAPGEF4-AS1-202ENST00000435328 4625 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
MRE11P49959 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
MRE11P49959 SLC28A1-201ENST00000286749 2636 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MRE11P49959 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
MRE11P49959 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MRE11P49959 DCAF12L1-201ENST00000371126 3382 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MRE11P49959 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
MRE11P49959 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC16.53■□□□□ 0.24
MRE11P49959 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC16.53■□□□□ 0.24
MRE11P49959 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MRE11P49959 FAM53B-203ENST00000392754 3557 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
MRE11P49959 OLFML3-203ENST00000393300 1961 ntTSL 3 BASIC16.53■□□□□ 0.24
MRE11P49959 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
MRE11P49959 POLD1-201ENST00000440232 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
MRE11P49959 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
MRE11P49959 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC16.52■□□□□ 0.24
MRE11P49959 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
MRE11P49959 TRPM5-203ENST00000533060 3562 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
MRE11P49959 ADORA2A-AS1-201ENST00000326341 2557 ntTSL 5 BASIC16.52■□□□□ 0.24
MRE11P49959 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
MRE11P49959 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC16.52■□□□□ 0.24
MRE11P49959 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
MRE11P49959 AC073862.5-201ENST00000624129 2027 ntBASIC16.52■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms