Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
COL5A1P20908 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL5A1P20908 CFAP157-206ENST00000614677 1796 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.32
COL5A1P20908 CATSPERE-202ENST00000366533 3019 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL5A1P20908 KRT8P38-201ENST00000441370 1430 ntBASIC13.08□□□□□ -0.32
COL5A1P20908 CCDC159-209ENST00000588790 1408 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
COL5A1P20908 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
COL5A1P20908 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
COL5A1P20908 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
COL5A1P20908 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
COL5A1P20908 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
COL5A1P20908 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL5A1P20908 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL5A1P20908 FAM230C-201ENST00000623511 1970 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL5A1P20908 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL5A1P20908 ETNPPL-202ENST00000411864 2028 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL5A1P20908 AL928921.2-201ENST00000641325 2442 ntBASIC13.07□□□□□ -0.32
COL5A1P20908 TRAPPC4-214ENST00000533632 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL5A1P20908 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC13.07□□□□□ -0.32
COL5A1P20908 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC13.07□□□□□ -0.32
COL5A1P20908 HORMAD1-202ENST00000361824 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL5A1P20908 TCEAL5-201ENST00000372680 1168 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL5A1P20908 TPT1P9-201ENST00000413759 514 ntBASIC13.07□□□□□ -0.32
COL5A1P20908 Z82185.1-201ENST00000417792 549 ntTSL 4 BASIC13.07□□□□□ -0.32
COL5A1P20908 RFNG-202ENST00000429557 994 ntTSL 5 BASIC13.07□□□□□ -0.32
COL5A1P20908 AC007679.1-201ENST00000458609 502 ntBASIC13.07□□□□□ -0.32
COL5A1P20908 AC097381.2-201ENST00000510640 859 ntTSL 2 BASIC13.07□□□□□ -0.32
COL5A1P20908 AC010478.1-203ENST00000558403 532 ntTSL 4 BASIC13.07□□□□□ -0.32
COL5A1P20908 NAA38-204ENST00000575208 529 ntTSL 3 BASIC13.07□□□□□ -0.32
COL5A1P20908 AC007998.2-201ENST00000589258 455 ntAPPRIS P1 TSL 3 BASIC13.07□□□□□ -0.32
COL5A1P20908 AL035427.1-201ENST00000602441 387 ntTSL 3 BASIC13.07□□□□□ -0.32
COL5A1P20908 AL512324.3-201ENST00000619383 882 ntBASIC13.07□□□□□ -0.32
COL5A1P20908 COASY-211ENST00000590958 1976 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL5A1P20908 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL5A1P20908 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL5A1P20908 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
COL5A1P20908 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
COL5A1P20908 CTRL-205ENST00000574481 1721 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL5A1P20908 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL5A1P20908 HRH2-202ENST00000377291 2561 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL5A1P20908 AL031056.1-202ENST00000635954 2193 ntTSL 5 BASIC13.07□□□□□ -0.32
COL5A1P20908 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL5A1P20908 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC13.07□□□□□ -0.32
COL5A1P20908 AC245140.2-201ENST00000624054 1939 ntBASIC13.07□□□□□ -0.32
COL5A1P20908 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL5A1P20908 CCDC42-201ENST00000293845 1374 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
COL5A1P20908 CROT-203ENST00000419147 2959 ntTSL 2 BASIC13.07□□□□□ -0.32
COL5A1P20908 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
COL5A1P20908 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.32
COL5A1P20908 PAEP-201ENST00000277508 821 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL5A1P20908 NR1I3-201ENST00000367979 1074 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL5A1P20908 NR1I3-207ENST00000367985 1074 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL5A1P20908 S100A2-202ENST00000368708 998 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL5A1P20908 PRUNE1-205ENST00000368937 1850 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL5A1P20908 JPT2-203ENST00000382711 894 ntTSL 4 BASIC13.06□□□□□ -0.32
COL5A1P20908 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL5A1P20908 TUBB2BP1-201ENST00000404155 871 ntBASIC13.06□□□□□ -0.32
COL5A1P20908 GRP-202ENST00000420468 579 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL5A1P20908 RBM14-205ENST00000443702 732 ntTSL 3 BASIC13.06□□□□□ -0.32
COL5A1P20908 AC008440.1-201ENST00000455835 439 ntTSL 5 BASIC13.06□□□□□ -0.32
COL5A1P20908 AC098820.2-201ENST00000457694 666 ntTSL 5 BASIC13.06□□□□□ -0.32
COL5A1P20908 SNORA47-201ENST00000458862 138 ntBASIC13.06□□□□□ -0.32
COL5A1P20908 B9D1-206ENST00000461069 923 ntTSL 2 BASIC13.06□□□□□ -0.32
COL5A1P20908 NR1I3-225ENST00000508387 634 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL5A1P20908 SAA2-206ENST00000530400 323 ntTSL 3 BASIC13.06□□□□□ -0.32
COL5A1P20908 LINC02376-201ENST00000536330 724 ntTSL 3 BASIC13.06□□□□□ -0.32
COL5A1P20908 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC13.06□□□□□ -0.32
COL5A1P20908 AC078878.2-201ENST00000543451 286 ntTSL 5 BASIC13.06□□□□□ -0.32
COL5A1P20908 BCDIN3D-AS1-202ENST00000549124 468 ntTSL 3 BASIC13.06□□□□□ -0.32
COL5A1P20908 AC136475.7-201ENST00000602949 592 ntBASIC13.06□□□□□ -0.32
COL5A1P20908 AC087072.1-201ENST00000603727 421 ntBASIC13.06□□□□□ -0.32
COL5A1P20908 SNX20-205ENST00000610485 557 ntTSL 5 BASIC13.06□□□□□ -0.32
COL5A1P20908 LINC01012-203ENST00000628762 743 ntTSL 5 BASIC13.06□□□□□ -0.32
COL5A1P20908 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC13.06□□□□□ -0.32
COL5A1P20908 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL5A1P20908 ERICH6-201ENST00000295910 2052 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL5A1P20908 MCOLN3-201ENST00000341115 1762 ntTSL 2 BASIC13.06□□□□□ -0.32
COL5A1P20908 STAMBP-204ENST00000409707 1649 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
COL5A1P20908 AL121753.2-201ENST00000624581 1461 ntBASIC13.06□□□□□ -0.32
COL5A1P20908 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC13.06□□□□□ -0.32
COL5A1P20908 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC13.06□□□□□ -0.32
COL5A1P20908 SULT1A2-202ENST00000395630 1322 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
COL5A1P20908 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL5A1P20908 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
COL5A1P20908 PINX1-201ENST00000314787 1545 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL5A1P20908 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL5A1P20908 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL5A1P20908 BIRC2-214ENST00000621637 3331 ntTSL 5 BASIC13.06□□□□□ -0.32
COL5A1P20908 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL5A1P20908 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL5A1P20908 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL5A1P20908 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC13.06□□□□□ -0.32
COL5A1P20908 SGK2-204ENST00000373100 2225 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
COL5A1P20908 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL5A1P20908 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
COL5A1P20908 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
COL5A1P20908 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL5A1P20908 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL5A1P20908 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL5A1P20908 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms