Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 LXN-201ENST00000264265 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 KRTAP4-6-201ENST00000345847 1055 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 MRPL55-209ENST00000366735 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 FANK1-203ENST00000368693 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 IGSF23-201ENST00000402988 989 ntAPPRIS P2 TSL 3 BASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 AL022725.1-201ENST00000436283 369 ntTSL 2 BASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 PRDX3P2-201ENST00000447051 611 ntBASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 RN7SL479P-201ENST00000472003 300 ntBASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 RN7SL638P-201ENST00000494527 290 ntBASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 GOLGA2P10-201ENST00000550961 817 ntBASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 AC140912.1-202ENST00000561802 194 ntTSL 3 BASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 SMIM28-201ENST00000573100 855 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 AC010319.2-201ENST00000594663 892 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 AC063977.2-201ENST00000601996 421 ntBASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 TSGA13-201ENST00000356588 1372 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 AC020917.4-201ENST00000623994 1999 ntBASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC17.44■□□□□ 0.38
SHANK3Q9BYB0 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
SHANK3Q9BYB0 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
SHANK3Q9BYB0 GPATCH2L-202ENST00000312858 2438 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
SHANK3Q9BYB0 LINC00910-201ENST00000341011 2303 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SHANK3Q9BYB0 GTF2F2-201ENST00000340473 2239 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SHANK3Q9BYB0 AC008038.1-201ENST00000634247 1314 ntBASIC17.43■□□□□ 0.38
SHANK3Q9BYB0 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SHANK3Q9BYB0 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SHANK3Q9BYB0 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC17.43■□□□□ 0.38
SHANK3Q9BYB0 HRASLS2-201ENST00000255695 742 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
SHANK3Q9BYB0 FAM86FP-201ENST00000338711 969 ntBASIC17.43■□□□□ 0.38
SHANK3Q9BYB0 COA6-201ENST00000366612 1013 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SHANK3Q9BYB0 S100A6-202ENST00000368720 673 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
SHANK3Q9BYB0 KRTAP12-1-201ENST00000391617 588 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
SHANK3Q9BYB0 SNORD88B-201ENST00000408454 91 ntBASIC17.43■□□□□ 0.38
SHANK3Q9BYB0 AL355500.1-201ENST00000439421 297 ntTSL 3 BASIC17.43■□□□□ 0.38
SHANK3Q9BYB0 KRT18P63-201ENST00000505463 979 ntBASIC17.43■□□□□ 0.38
SHANK3Q9BYB0 WASIR2-201ENST00000527434 1054 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SHANK3Q9BYB0 AC026150.1-201ENST00000562992 701 ntTSL 5 BASIC17.43■□□□□ 0.38
SHANK3Q9BYB0 ZNF674-AS1-202ENST00000609887 672 ntTSL 5 BASIC17.43■□□□□ 0.38
SHANK3Q9BYB0 AC134878.2-201ENST00000620700 1265 ntBASIC17.43■□□□□ 0.38
SHANK3Q9BYB0 CHCHD7-218ENST00000523975 1805 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SHANK3Q9BYB0 HSPA6-201ENST00000309758 2371 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
SHANK3Q9BYB0 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SHANK3Q9BYB0 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SHANK3Q9BYB0 CTSD-208ENST00000636843 1512 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
SHANK3Q9BYB0 C1QTNF9-202ENST00000382071 1854 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
SHANK3Q9BYB0 IP6K2-211ENST00000432678 1309 ntTSL 2 BASIC17.43■□□□□ 0.38
SHANK3Q9BYB0 AC106881.1-201ENST00000605849 3329 ntBASIC17.43■□□□□ 0.38
SHANK3Q9BYB0 FAM27E3-201ENST00000418795 1593 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SHANK3Q9BYB0 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHANK3Q9BYB0 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
SHANK3Q9BYB0 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHANK3Q9BYB0 SLC36A1-211ENST00000616007 1389 ntTSL 2 BASIC17.42■□□□□ 0.38
SHANK3Q9BYB0 CCL24-201ENST00000222902 582 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHANK3Q9BYB0 CHCHD1-202ENST00000372837 1202 ntTSL 2 BASIC17.42■□□□□ 0.38
SHANK3Q9BYB0 FAM138A-201ENST00000417324 1187 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SHANK3Q9BYB0 RN7SL794P-201ENST00000469816 280 ntBASIC17.42■□□□□ 0.38
SHANK3Q9BYB0 FAM138D-201ENST00000504074 1187 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SHANK3Q9BYB0 FAM138E-201ENST00000507796 1187 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SHANK3Q9BYB0 VEGFA-224ENST00000523873 784 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SHANK3Q9BYB0 AC025265.3-201ENST00000550175 468 ntTSL 3 BASIC17.42■□□□□ 0.38
SHANK3Q9BYB0 IL32-230ENST00000551122 733 ntAPPRIS ALT2 TSL 3 BASIC17.42■□□□□ 0.38
SHANK3Q9BYB0 AL109954.3-201ENST00000615088 558 ntBASIC17.42■□□□□ 0.38
SHANK3Q9BYB0 PACRG-AS3-204ENST00000620150 567 ntTSL 4 BASIC17.42■□□□□ 0.38
SHANK3Q9BYB0 NAXD-201ENST00000309957 2659 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
SHANK3Q9BYB0 SLC26A5-203ENST00000354356 2686 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
SHANK3Q9BYB0 MCF2L-209ENST00000397036 1544 ntTSL 2 BASIC17.42■□□□□ 0.38
SHANK3Q9BYB0 TRIP12-205ENST00000409677 1507 ntTSL 2 BASIC17.42■□□□□ 0.38
SHANK3Q9BYB0 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
SHANK3Q9BYB0 VOPP1-217ENST00000625836 1400 ntTSL 2 BASIC17.42■□□□□ 0.38
SHANK3Q9BYB0 SYBU-217ENST00000528331 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHANK3Q9BYB0 RMND5B-212ENST00000542098 1681 ntTSL 5 BASIC17.42■□□□□ 0.38
SHANK3Q9BYB0 PHF10-206ENST00000621772 1651 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHANK3Q9BYB0 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC17.42■□□□□ 0.38
SHANK3Q9BYB0 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHANK3Q9BYB0 AC005912.2-201ENST00000619492 2400 ntBASIC17.42■□□□□ 0.38
SHANK3Q9BYB0 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHANK3Q9BYB0 ZNF582-201ENST00000301310 2824 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHANK3Q9BYB0 GPRC5B-209ENST00000569479 2984 ntAPPRIS P2 TSL 5 BASIC17.42■□□□□ 0.38
SHANK3Q9BYB0 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
SHANK3Q9BYB0 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 TESPA1-202ENST00000449076 2010 ntAPPRIS P3 TSL 2 BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 SLC7A9-201ENST00000023064 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 IL2RG-203ENST00000374202 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 CTLA4-203ENST00000427473 969 ntTSL 5 BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 CST7-201ENST00000480798 930 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 IQSEC2-205ENST00000498281 673 ntTSL 3 BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 AC104117.4-201ENST00000521486 847 ntBASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 FAR1-IT1-201ENST00000525233 368 ntTSL 3 BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 AC027228.1-201ENST00000560094 325 ntTSL 3 BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 AC007728.1-202ENST00000564510 787 ntTSL 3 BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 AC004584.1-201ENST00000572187 549 ntTSL 3 BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 MIR4763-201ENST00000581461 92 ntBASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 AC022001.3-201ENST00000606330 596 ntBASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 AC079779.4-201ENST00000619113 548 ntTSL 5 BASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 AC099795.2-201ENST00000639582 440 ntBASIC17.41■□□□□ 0.38
SHANK3Q9BYB0 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms