Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CDX1P47902 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
CDX1P47902 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC11.64□□□□□ -0.55
CDX1P47902 TRIM4-201ENST00000349062 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
CDX1P47902 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CDX1P47902 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
CDX1P47902 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC11.64□□□□□ -0.55
CDX1P47902 ADAM32-206ENST00000519315 2168 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CDX1P47902 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CDX1P47902 DSCAML1-203ENST00000527706 6099 ntTSL 5 BASIC11.64□□□□□ -0.55
CDX1P47902 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CDX1P47902 FBRSL1-205ENST00000542061 3175 ntAPPRIS ALT2 TSL 2 BASIC11.64□□□□□ -0.55
CDX1P47902 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CDX1P47902 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC11.64□□□□□ -0.55
CDX1P47902 C11orf87-201ENST00000327419 5884 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CDX1P47902 ZNF799-202ENST00000430385 2583 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
CDX1P47902 INTS3-204ENST00000435409 3597 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
CDX1P47902 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
CDX1P47902 LARP7-202ENST00000344442 2286 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
CDX1P47902 NCS1-201ENST00000372398 4991 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CDX1P47902 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CDX1P47902 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CDX1P47902 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC11.64□□□□□ -0.55
CDX1P47902 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
CDX1P47902 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CDX1P47902 AL136309.1-201ENST00000403917 691 ntBASIC11.64□□□□□ -0.55
CDX1P47902 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC11.64□□□□□ -0.55
CDX1P47902 SERF2-209ENST00000409646 559 ntTSL 4 BASIC11.64□□□□□ -0.55
CDX1P47902 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC11.64□□□□□ -0.55
CDX1P47902 CDC23-208ENST00000505120 455 ntTSL 3 BASIC11.64□□□□□ -0.55
CDX1P47902 AL391280.1-201ENST00000506969 1062 ntBASIC11.64□□□□□ -0.55
CDX1P47902 FAM86HP-204ENST00000513466 959 ntBASIC11.64□□□□□ -0.55
CDX1P47902 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC11.64□□□□□ -0.55
CDX1P47902 NCK2-206ENST00000522586 490 ntTSL 5 BASIC11.64□□□□□ -0.55
CDX1P47902 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC11.64□□□□□ -0.55
CDX1P47902 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC11.64□□□□□ -0.55
CDX1P47902 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC11.64□□□□□ -0.55
CDX1P47902 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC11.64□□□□□ -0.55
CDX1P47902 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC11.64□□□□□ -0.55
CDX1P47902 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC11.64□□□□□ -0.55
CDX1P47902 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC11.64□□□□□ -0.55
CDX1P47902 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC11.64□□□□□ -0.55
CDX1P47902 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
CDX1P47902 MEGF11-201ENST00000288745 5707 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CDX1P47902 CCDC13-201ENST00000310232 2943 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CDX1P47902 RBM19-201ENST00000261741 4194 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CDX1P47902 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
CDX1P47902 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
CDX1P47902 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CDX1P47902 CYTH1-203ENST00000585509 3315 ntTSL 5 BASIC11.64□□□□□ -0.55
CDX1P47902 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CDX1P47902 AC009093.1-201ENST00000566070 2099 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CDX1P47902 C15orf39-202ENST00000394987 4430 ntAPPRIS P2 TSL 1 (best) BASIC11.64□□□□□ -0.55
CDX1P47902 AC010536.1-201ENST00000538868 2611 ntBASIC11.64□□□□□ -0.55
CDX1P47902 ASCC3-203ENST00000369143 3433 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
CDX1P47902 SUOX-202ENST00000356124 2306 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CDX1P47902 ZBTB42-201ENST00000342537 3800 ntAPPRIS P1 BASIC11.64□□□□□ -0.55
CDX1P47902 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CDX1P47902 SNX25-201ENST00000264694 3264 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
CDX1P47902 FAM214B-204ENST00000378566 2566 ntTSL 2 BASIC11.64□□□□□ -0.55
CDX1P47902 BTBD9-206ENST00000481247 8525 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
CDX1P47902 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC11.64□□□□□ -0.55
CDX1P47902 CREBL2-201ENST00000228865 3754 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
CDX1P47902 AC026992.2-203ENST00000563004 2419 ntBASIC11.64□□□□□ -0.55
CDX1P47902 GALNT16-201ENST00000337827 5708 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CDX1P47902 PASK-204ENST00000405260 4942 ntAPPRIS P3 TSL 5 BASIC11.63□□□□□ -0.55
CDX1P47902 LILRB1-203ENST00000396317 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
CDX1P47902 SIGLEC6-201ENST00000343300 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
CDX1P47902 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
CDX1P47902 SLC28A1-203ENST00000394573 2769 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CDX1P47902 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CDX1P47902 CSF3R-201ENST00000331941 2375 ntTSL 5 BASIC11.63□□□□□ -0.55
CDX1P47902 SEMA3F-201ENST00000002829 3802 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
CDX1P47902 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CDX1P47902 EPHA5-203ENST00000432638 3662 ntTSL 5 BASIC11.63□□□□□ -0.55
CDX1P47902 ATG7-201ENST00000354449 4959 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CDX1P47902 IFFO1-206ENST00000465801 2850 ntTSL 5 BASIC11.63□□□□□ -0.55
CDX1P47902 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC11.63□□□□□ -0.55
CDX1P47902 TRAF3IP3-204ENST00000367026 2058 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CDX1P47902 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC11.63□□□□□ -0.55
CDX1P47902 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
CDX1P47902 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CDX1P47902 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CDX1P47902 BDH1-201ENST00000358186 3330 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
CDX1P47902 MIR326-201ENST00000362220 95 ntBASIC11.63□□□□□ -0.55
CDX1P47902 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC11.63□□□□□ -0.55
CDX1P47902 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
CDX1P47902 NDUFAB1P1-201ENST00000404262 460 ntBASIC11.63□□□□□ -0.55
CDX1P47902 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
CDX1P47902 TLE1P1-201ENST00000422965 589 ntBASIC11.63□□□□□ -0.55
CDX1P47902 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC11.63□□□□□ -0.55
CDX1P47902 RGS5-214ENST00000429865 754 ntTSL 3 BASIC11.63□□□□□ -0.55
CDX1P47902 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
CDX1P47902 MTX1P1-201ENST00000440904 838 ntBASIC11.63□□□□□ -0.55
CDX1P47902 GOLGA2P4-201ENST00000441462 777 ntBASIC11.63□□□□□ -0.55
CDX1P47902 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
CDX1P47902 PACS1-203ENST00000524815 628 ntTSL 4 BASIC11.63□□□□□ -0.55
CDX1P47902 FAM8A2P-201ENST00000528813 1142 ntBASIC11.63□□□□□ -0.55
CDX1P47902 ACR-203ENST00000529621 708 ntTSL 5 BASIC11.63□□□□□ -0.55
CDX1P47902 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC11.63□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms