Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
RFC3P40938 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC12.99□□□□□ -0.33
RFC3P40938 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
RFC3P40938 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
RFC3P40938 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
RFC3P40938 FOXD4L5-201ENST00000377420 3109 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
RFC3P40938 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC12.99□□□□□ -0.33
RFC3P40938 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
RFC3P40938 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
RFC3P40938 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC12.99□□□□□ -0.33
RFC3P40938 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
RFC3P40938 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
RFC3P40938 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
RFC3P40938 TEX13C-201ENST00000632600 5095 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
RFC3P40938 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
RFC3P40938 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
RFC3P40938 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC12.98□□□□□ -0.33
RFC3P40938 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
RFC3P40938 OR2C3-201ENST00000366487 8467 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
RFC3P40938 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
RFC3P40938 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
RFC3P40938 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
RFC3P40938 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
RFC3P40938 LINC01230-201ENST00000625222 3017 ntBASIC12.98□□□□□ -0.33
RFC3P40938 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
RFC3P40938 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
RFC3P40938 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC12.98□□□□□ -0.33
RFC3P40938 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
RFC3P40938 LINC002481-201ENST00000499502 1821 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
RFC3P40938 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
RFC3P40938 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
RFC3P40938 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
RFC3P40938 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC12.98□□□□□ -0.33
RFC3P40938 PSMG4-203ENST00000380306 726 ntTSL 3 BASIC12.98□□□□□ -0.33
RFC3P40938 MIR645-201ENST00000385283 94 ntBASIC12.98□□□□□ -0.33
RFC3P40938 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
RFC3P40938 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
RFC3P40938 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC12.98□□□□□ -0.33
RFC3P40938 MFAP3-202ENST00000439768 1186 ntTSL 2 BASIC12.98□□□□□ -0.33
RFC3P40938 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
RFC3P40938 TPT1P11-201ENST00000458482 498 ntBASIC12.98□□□□□ -0.33
RFC3P40938 AC104784.1-201ENST00000473096 294 ntBASIC12.98□□□□□ -0.33
RFC3P40938 CFL1-206ENST00000527344 962 ntTSL 2 BASIC12.98□□□□□ -0.33
RFC3P40938 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC12.98□□□□□ -0.33
RFC3P40938 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC12.98□□□□□ -0.33
RFC3P40938 MAX-218ENST00000557746 571 ntTSL 4 BASIC12.98□□□□□ -0.33
RFC3P40938 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC12.98□□□□□ -0.33
RFC3P40938 RPL17P45-201ENST00000586289 509 ntBASIC12.98□□□□□ -0.33
RFC3P40938 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC12.98□□□□□ -0.33
RFC3P40938 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC12.98□□□□□ -0.33
RFC3P40938 AC107464.3-201ENST00000609172 737 ntBASIC12.98□□□□□ -0.33
RFC3P40938 AC087392.5-201ENST00000612517 489 ntBASIC12.98□□□□□ -0.33
RFC3P40938 AC084781.1-201ENST00000613737 656 ntBASIC12.98□□□□□ -0.33
RFC3P40938 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
RFC3P40938 CAP2-209ENST00000616440 2776 ntTSL 2 BASIC12.98□□□□□ -0.33
RFC3P40938 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
RFC3P40938 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
RFC3P40938 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
RFC3P40938 LIG1-203ENST00000536218 3179 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
RFC3P40938 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC12.98□□□□□ -0.33
RFC3P40938 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
RFC3P40938 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
RFC3P40938 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
RFC3P40938 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC12.98□□□□□ -0.33
RFC3P40938 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
RFC3P40938 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
RFC3P40938 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
RFC3P40938 AC067931.2-201ENST00000623655 2003 ntBASIC12.98□□□□□ -0.33
RFC3P40938 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
RFC3P40938 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
RFC3P40938 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC12.98□□□□□ -0.33
RFC3P40938 ABCA17P-202ENST00000469908 4188 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
RFC3P40938 HPGD-209ENST00000510901 1535 ntTSL 2 BASIC12.98□□□□□ -0.33
RFC3P40938 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
RFC3P40938 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
RFC3P40938 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC12.98□□□□□ -0.33
RFC3P40938 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
RFC3P40938 CEP295NL-205ENST00000619342 1866 ntTSL 5 BASIC12.97□□□□□ -0.33
RFC3P40938 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC12.97□□□□□ -0.33
RFC3P40938 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
RFC3P40938 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC12.97□□□□□ -0.33
RFC3P40938 OS9-201ENST00000257966 2505 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
RFC3P40938 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC12.97□□□□□ -0.33
RFC3P40938 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC12.97□□□□□ -0.33
RFC3P40938 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
RFC3P40938 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
RFC3P40938 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
RFC3P40938 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC12.97□□□□□ -0.33
RFC3P40938 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.33
RFC3P40938 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC12.97□□□□□ -0.33
RFC3P40938 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
RFC3P40938 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC12.97□□□□□ -0.33
RFC3P40938 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
RFC3P40938 RPSAP31-201ENST00000416648 895 ntBASIC12.97□□□□□ -0.33
RFC3P40938 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
RFC3P40938 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC12.97□□□□□ -0.33
RFC3P40938 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC12.97□□□□□ -0.33
RFC3P40938 PARP8-206ENST00000503665 572 ntTSL 4 BASIC12.97□□□□□ -0.33
RFC3P40938 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC12.97□□□□□ -0.33
RFC3P40938 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC12.97□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms