Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB1P09429 GAP43-202ENST00000393780 1901 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB1P09429 C16orf82-201ENST00000418886 2268 ntAPPRIS ALT2 BASIC16.61■□□□□ 0.25
HMGB1P09429 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB1P09429 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB1P09429 IKZF1-205ENST00000357364 5925 ntTSL 5 BASIC16.61■□□□□ 0.25
HMGB1P09429 CCDC117-202ENST00000421503 3766 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGB1P09429 IL17B-201ENST00000261796 696 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB1P09429 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
HMGB1P09429 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB1P09429 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
HMGB1P09429 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB1P09429 NPPA-202ENST00000376480 855 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB1P09429 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC16.61■□□□□ 0.25
HMGB1P09429 MIR1247-201ENST00000408206 136 ntBASIC16.61■□□□□ 0.25
HMGB1P09429 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB1P09429 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC16.61■□□□□ 0.25
HMGB1P09429 AL109924.1-201ENST00000444586 914 ntTSL 3 BASIC16.61■□□□□ 0.25
HMGB1P09429 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC16.61■□□□□ 0.25
HMGB1P09429 PFN2-206ENST00000461930 606 ntTSL 4 BASIC16.61■□□□□ 0.25
HMGB1P09429 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGB1P09429 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC16.61■□□□□ 0.25
HMGB1P09429 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
HMGB1P09429 SDHD-202ENST00000525291 790 ntTSL 3 BASIC16.61■□□□□ 0.25
HMGB1P09429 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC16.61■□□□□ 0.25
HMGB1P09429 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC16.61■□□□□ 0.25
HMGB1P09429 RN7SL774P-201ENST00000577467 290 ntBASIC16.61■□□□□ 0.25
HMGB1P09429 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC16.61■□□□□ 0.25
HMGB1P09429 ZNF350-AS1-202ENST00000600253 577 ntTSL 4 BASIC16.61■□□□□ 0.25
HMGB1P09429 AL021707.6-201ENST00000609212 491 ntBASIC16.61■□□□□ 0.25
HMGB1P09429 NPPA-203ENST00000610706 849 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
HMGB1P09429 MEG3_2.1-201ENST00000611456 105 ntBASIC16.61■□□□□ 0.25
HMGB1P09429 AL161773.1-201ENST00000624845 863 ntBASIC16.61■□□□□ 0.25
HMGB1P09429 AGAP12P-201ENST00000585227 2359 ntBASIC16.61■□□□□ 0.25
HMGB1P09429 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB1P09429 AL772337.1-201ENST00000399186 2014 ntTSL 5 BASIC16.61■□□□□ 0.25
HMGB1P09429 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB1P09429 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB1P09429 AL365181.3-201ENST00000605886 3222 ntBASIC16.61■□□□□ 0.25
HMGB1P09429 PARP3-202ENST00000417220 2472 ntAPPRIS P3 TSL 5 BASIC16.61■□□□□ 0.25
HMGB1P09429 MARK2P16-201ENST00000605714 1723 ntBASIC16.61■□□□□ 0.25
HMGB1P09429 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB1P09429 HEXA-206ENST00000566304 1795 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGB1P09429 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB1P09429 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB1P09429 YTHDF3-205ENST00000539294 5163 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB1P09429 SARS-202ENST00000369923 1882 ntTSL 5 BASIC16.61■□□□□ 0.25
HMGB1P09429 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGB1P09429 LILRA2-203ENST00000391737 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB1P09429 KRT8P43-201ENST00000406052 1458 ntBASIC16.61■□□□□ 0.25
HMGB1P09429 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC16.61■□□□□ 0.25
HMGB1P09429 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
HMGB1P09429 LINC00538-201ENST00000626109 1906 ntBASIC16.6■□□□□ 0.25
HMGB1P09429 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB1P09429 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
HMGB1P09429 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB1P09429 CSNK1D-202ENST00000314028 3712 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB1P09429 CFAP43-201ENST00000278064 2963 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB1P09429 DENND3-221ENST00000523308 2959 ntTSL 2 BASIC16.6■□□□□ 0.25
HMGB1P09429 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB1P09429 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB1P09429 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
HMGB1P09429 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
HMGB1P09429 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB1P09429 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB1P09429 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB1P09429 COX14-201ENST00000317943 708 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
HMGB1P09429 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB1P09429 CMC4-201ENST00000369479 864 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
HMGB1P09429 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB1P09429 ELK2AP-201ENST00000392510 1007 ntBASIC16.6■□□□□ 0.25
HMGB1P09429 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC16.6■□□□□ 0.25
HMGB1P09429 GPAA1P2-201ENST00000417923 928 ntBASIC16.6■□□□□ 0.25
HMGB1P09429 PPP1R2P4-201ENST00000424051 595 ntBASIC16.6■□□□□ 0.25
HMGB1P09429 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB1P09429 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB1P09429 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
HMGB1P09429 LINC01783-202ENST00000614408 828 ntBASIC16.6■□□□□ 0.25
HMGB1P09429 BX284668.2-205ENST00000619677 828 ntBASIC16.6■□□□□ 0.25
HMGB1P09429 DDC-214ENST00000622873 1839 ntTSL 3 BASIC16.6■□□□□ 0.25
HMGB1P09429 APP-205ENST00000358918 2366 ntTSL 5 BASIC16.6■□□□□ 0.25
HMGB1P09429 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB1P09429 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB1P09429 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB1P09429 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB1P09429 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB1P09429 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC16.6■□□□□ 0.25
HMGB1P09429 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC16.6■□□□□ 0.25
HMGB1P09429 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
HMGB1P09429 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC16.6■□□□□ 0.25
HMGB1P09429 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB1P09429 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB1P09429 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
HMGB1P09429 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB1P09429 GDF11-201ENST00000257868 8657 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB1P09429 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC16.59■□□□□ 0.25
HMGB1P09429 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
HMGB1P09429 CR383656.2-201ENST00000548656 2254 ntBASIC16.59■□□□□ 0.25
HMGB1P09429 GNAI2-203ENST00000422163 2407 ntTSL 2 BASIC16.59■□□□□ 0.25
HMGB1P09429 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms