Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 CELA3A-201ENST00000290122 887 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LRCH3Q96II8 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC15.21■□□□□ 0.03
LRCH3Q96II8 RPL18AP16-201ENST00000424057 531 ntBASIC15.21■□□□□ 0.03
LRCH3Q96II8 MED19-202ENST00000431606 1203 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LRCH3Q96II8 KRT18P62-201ENST00000446618 1287 ntBASIC15.21■□□□□ 0.03
LRCH3Q96II8 AC006450.3-201ENST00000453529 2146 ntTSL 2 BASIC15.21■□□□□ 0.03
LRCH3Q96II8 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC15.21■□□□□ 0.03
LRCH3Q96II8 AC087269.1-202ENST00000519147 400 ntTSL 3 BASIC15.21■□□□□ 0.03
LRCH3Q96II8 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC15.21■□□□□ 0.03
LRCH3Q96II8 AL445363.2-201ENST00000554608 837 ntTSL 2 BASIC15.21■□□□□ 0.03
LRCH3Q96II8 BATF-202ENST00000555504 361 ntTSL 2 BASIC15.21■□□□□ 0.03
LRCH3Q96II8 AC022558.1-201ENST00000560450 454 ntTSL 3 BASIC15.21■□□□□ 0.03
LRCH3Q96II8 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC15.21■□□□□ 0.03
LRCH3Q96II8 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC15.21■□□□□ 0.03
LRCH3Q96II8 PRR20FP-201ENST00000603320 180 ntBASIC15.21■□□□□ 0.03
LRCH3Q96II8 AL591471.1-201ENST00000621855 229 ntBASIC15.21■□□□□ 0.03
LRCH3Q96II8 AL445363.1-201ENST00000623749 952 ntTSL 2 BASIC15.21■□□□□ 0.03
LRCH3Q96II8 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LRCH3Q96II8 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC15.21■□□□□ 0.03
LRCH3Q96II8 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LRCH3Q96II8 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC15.21■□□□□ 0.03
LRCH3Q96II8 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC15.21■□□□□ 0.03
LRCH3Q96II8 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LRCH3Q96II8 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
LRCH3Q96II8 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LRCH3Q96II8 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
LRCH3Q96II8 PRL-201ENST00000306482 1354 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
LRCH3Q96II8 TSGA13-201ENST00000356588 1372 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
LRCH3Q96II8 NFYC-215ENST00000456393 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.02
LRCH3Q96II8 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
LRCH3Q96II8 SPAG1-205ENST00000520508 1796 ntTSL 5 BASIC15.21■□□□□ 0.02
LRCH3Q96II8 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
LRCH3Q96II8 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
LRCH3Q96II8 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
LRCH3Q96II8 PNLIP-201ENST00000369221 1483 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LRCH3Q96II8 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LRCH3Q96II8 LINC01101-201ENST00000622953 1884 ntBASIC15.2■□□□□ 0.02
LRCH3Q96II8 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC15.2■□□□□ 0.02
LRCH3Q96II8 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
LRCH3Q96II8 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LRCH3Q96II8 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LRCH3Q96II8 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC15.2■□□□□ 0.02
LRCH3Q96II8 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
LRCH3Q96II8 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
LRCH3Q96II8 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LRCH3Q96II8 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
LRCH3Q96II8 DPEP2-202ENST00000393847 1697 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LRCH3Q96II8 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC15.2■□□□□ 0.02
LRCH3Q96II8 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LRCH3Q96II8 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LRCH3Q96II8 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
LRCH3Q96II8 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LRCH3Q96II8 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC15.2■□□□□ 0.02
LRCH3Q96II8 CCL24-201ENST00000222902 582 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LRCH3Q96II8 PDCD6-201ENST00000264933 1135 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
LRCH3Q96II8 SMIM4-201ENST00000307106 274 ntTSL 2 BASIC15.2■□□□□ 0.02
LRCH3Q96II8 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
LRCH3Q96II8 PRDX2-202ENST00000334482 784 ntTSL 3 BASIC15.2■□□□□ 0.02
LRCH3Q96II8 CELA3A-202ENST00000374663 649 ntTSL 2 BASIC15.2■□□□□ 0.02
LRCH3Q96II8 AL121949.1-201ENST00000402043 968 ntBASIC15.2■□□□□ 0.02
LRCH3Q96II8 SAPCD1-AS1-202ENST00000419679 461 ntTSL 3 BASIC15.2■□□□□ 0.02
LRCH3Q96II8 EIF2S2P3-201ENST00000428356 999 ntBASIC15.2■□□□□ 0.02
LRCH3Q96II8 AC004910.1-201ENST00000433493 787 ntBASIC15.2■□□□□ 0.02
LRCH3Q96II8 ZNF877P-201ENST00000437614 612 ntBASIC15.2■□□□□ 0.02
LRCH3Q96II8 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC15.2■□□□□ 0.02
LRCH3Q96II8 AC069421.1-201ENST00000447462 323 ntBASIC15.2■□□□□ 0.02
LRCH3Q96II8 AL136084.1-201ENST00000449172 318 ntBASIC15.2■□□□□ 0.02
LRCH3Q96II8 AC009517.1-201ENST00000454750 570 ntBASIC15.2■□□□□ 0.02
LRCH3Q96II8 RN7SL523P-201ENST00000484401 298 ntBASIC15.2■□□□□ 0.02
LRCH3Q96II8 SLC14A1-206ENST00000535474 1048 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LRCH3Q96II8 Metazoa_SRP.12-201ENST00000553249 268 ntBASIC15.2■□□□□ 0.02
LRCH3Q96II8 AL592146.2-201ENST00000565388 444 ntTSL 5 BASIC15.2■□□□□ 0.02
LRCH3Q96II8 AC005921.2-201ENST00000574246 670 ntTSL 5 BASIC15.2■□□□□ 0.02
LRCH3Q96II8 LIMD2-210ENST00000582055 509 ntTSL 2 BASIC15.2■□□□□ 0.02
LRCH3Q96II8 MIR5193-201ENST00000584510 109 ntBASIC15.2■□□□□ 0.02
LRCH3Q96II8 AC239600.1-201ENST00000603201 462 ntBASIC15.2■□□□□ 0.02
LRCH3Q96II8 AC134878.2-201ENST00000620700 1265 ntBASIC15.2■□□□□ 0.02
LRCH3Q96II8 AC005609.5-201ENST00000624712 1053 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LRCH3Q96II8 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
LRCH3Q96II8 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC15.2■□□□□ 0.02
LRCH3Q96II8 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
LRCH3Q96II8 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC15.2■□□□□ 0.02
LRCH3Q96II8 LILRP1-201ENST00000444199 1370 ntBASIC15.2■□□□□ 0.02
LRCH3Q96II8 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC15.2■□□□□ 0.02
LRCH3Q96II8 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
LRCH3Q96II8 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
LRCH3Q96II8 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
LRCH3Q96II8 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC15.2■□□□□ 0.02
LRCH3Q96II8 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LRCH3Q96II8 GOLGA8DP-202ENST00000341390 2184 ntBASIC15.19■□□□□ 0.02
LRCH3Q96II8 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC15.19■□□□□ 0.02
LRCH3Q96II8 DAO-208ENST00000551281 1345 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LRCH3Q96II8 C7orf49-214ENST00000620897 1349 ntTSL 3 BASIC15.19■□□□□ 0.02
LRCH3Q96II8 AC139749.1-202ENST00000617529 3139 ntBASIC15.19■□□□□ 0.02
LRCH3Q96II8 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LRCH3Q96II8 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LRCH3Q96II8 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC15.19■□□□□ 0.02
LRCH3Q96II8 AC007191.1-201ENST00000623179 2995 ntBASIC15.19■□□□□ 0.02
LRCH3Q96II8 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC15.19■□□□□ 0.02
LRCH3Q96II8 LACTB2-201ENST00000276590 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms