Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 AP000437.1-201ENST00000624057 2085 ntBASIC15.91■□□□□ 0.14
TPM4P67936 RGS3-205ENST00000374134 2862 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TPM4P67936 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TPM4P67936 USP19-206ENST00000417901 4706 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
TPM4P67936 CACNA2D2-202ENST00000360963 5272 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
TPM4P67936 C12orf43-202ENST00000445832 2397 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
TPM4P67936 LHX6-210ENST00000559895 3587 ntTSL 2 BASIC15.91■□□□□ 0.14
TPM4P67936 MSNP1-201ENST00000511640 1732 ntBASIC15.91■□□□□ 0.14
TPM4P67936 NADK-202ENST00000341991 3098 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
TPM4P67936 MSMO1-201ENST00000261507 2269 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TPM4P67936 DYSF-206ENST00000409744 6564 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
TPM4P67936 DYSF-209ENST00000410041 6594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
TPM4P67936 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TPM4P67936 SPCS3-201ENST00000503362 4571 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TPM4P67936 ARHGEF33-201ENST00000398800 4300 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
TPM4P67936 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TPM4P67936 SNCAIP-203ENST00000379538 2588 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TPM4P67936 YY1AP1-208ENST00000361831 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
TPM4P67936 PCDHA6-201ENST00000378126 3267 ntBASIC15.9■□□□□ 0.14
TPM4P67936 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TPM4P67936 AL358781.1-202ENST00000321081 1360 ntBASIC15.9■□□□□ 0.14
TPM4P67936 FAM157A-203ENST00000634862 6083 ntTSL 5 BASIC15.9■□□□□ 0.14
TPM4P67936 CAMSAP3-201ENST00000160298 3889 ntAPPRIS P3 TSL 2 BASIC15.9■□□□□ 0.14
TPM4P67936 PSD-202ENST00000406432 3861 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TPM4P67936 ZSCAN5A-206ENST00000587492 1542 ntTSL 2 BASIC15.9■□□□□ 0.14
TPM4P67936 PCGF2-203ENST00000616129 1534 ntTSL 5 BASIC15.9■□□□□ 0.14
TPM4P67936 MAP7D2-204ENST00000452324 2233 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
TPM4P67936 ACVR1B-202ENST00000415850 1665 ntTSL 2 BASIC15.9■□□□□ 0.14
TPM4P67936 CCND3-215ENST00000511642 2394 ntTSL 2 BASIC15.9■□□□□ 0.14
TPM4P67936 CPNE2-204ENST00000565874 1976 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TPM4P67936 GUK1-206ENST00000366723 845 ntTSL 5 BASIC15.9■□□□□ 0.14
TPM4P67936 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TPM4P67936 PAX7-203ENST00000420770 5538 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TPM4P67936 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC15.9■□□□□ 0.14
TPM4P67936 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC15.9■□□□□ 0.14
TPM4P67936 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC15.9■□□□□ 0.14
TPM4P67936 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TPM4P67936 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
TPM4P67936 RERG-204ENST00000536465 2134 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
TPM4P67936 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC15.9■□□□□ 0.14
TPM4P67936 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC15.9■□□□□ 0.14
TPM4P67936 PAM16-211ENST00000575848 518 ntTSL 3 BASIC15.9■□□□□ 0.14
TPM4P67936 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
TPM4P67936 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
TPM4P67936 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC15.9■□□□□ 0.14
TPM4P67936 AC004623.1-201ENST00000624592 2127 ntBASIC15.9■□□□□ 0.14
TPM4P67936 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC15.9■□□□□ 0.14
TPM4P67936 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC15.9■□□□□ 0.14
TPM4P67936 PPP1R13L-201ENST00000360957 3104 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TPM4P67936 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC15.9■□□□□ 0.14
TPM4P67936 ZNF426-204ENST00000593003 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
TPM4P67936 RERE-212ENST00000476556 4598 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TPM4P67936 AGAP2-203ENST00000547588 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
TPM4P67936 PLAT-203ENST00000429089 2599 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
TPM4P67936 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC15.9■□□□□ 0.14
TPM4P67936 MSTO2P-201ENST00000314835 1709 ntBASIC15.9■□□□□ 0.14
TPM4P67936 KLHL13-209ENST00000545703 3322 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TPM4P67936 MTMR2-201ENST00000346299 4681 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TPM4P67936 MTMR2-203ENST00000393223 4681 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TPM4P67936 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TPM4P67936 RCC2P1-201ENST00000452257 1476 ntBASIC15.9■□□□□ 0.14
TPM4P67936 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TPM4P67936 DNAH10OS-201ENST00000514254 5040 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
TPM4P67936 FUBP1-203ENST00000370768 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TPM4P67936 C3orf18-206ENST00000449241 2365 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TPM4P67936 AC016582.3-202ENST00000443870 6580 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TPM4P67936 CLPX-201ENST00000300107 4695 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.14
TPM4P67936 AL353608.3-202ENST00000429953 4384 ntTSL 5 BASIC15.89■□□□□ 0.14
TPM4P67936 COL16A1-202ENST00000373668 3643 ntTSL 2 BASIC15.89■□□□□ 0.13
TPM4P67936 C12orf76-201ENST00000309050 1964 ntTSL 2 BASIC15.89■□□□□ 0.13
TPM4P67936 NTN4-203ENST00000538383 1971 ntTSL 2 BASIC15.89■□□□□ 0.13
TPM4P67936 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TPM4P67936 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TPM4P67936 ZNF419-202ENST00000347466 3654 ntAPPRIS P3 TSL 2 BASIC15.89■□□□□ 0.13
TPM4P67936 MTMR3-201ENST00000323630 5866 ntTSL 5 BASIC15.89■□□□□ 0.13
TPM4P67936 PTCD1-201ENST00000292478 5582 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TPM4P67936 POLD1-210ENST00000599857 3435 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TPM4P67936 PHF20-203ENST00000374012 5922 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TPM4P67936 ICOSLG-203ENST00000400379 4246 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
TPM4P67936 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
TPM4P67936 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TPM4P67936 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC15.89■□□□□ 0.13
TPM4P67936 TOE1-201ENST00000372090 2389 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TPM4P67936 IFT172-202ENST00000359466 2207 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TPM4P67936 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TPM4P67936 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TPM4P67936 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TPM4P67936 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
TPM4P67936 MGST3-203ENST00000367885 680 ntTSL 2 BASIC15.89■□□□□ 0.13
TPM4P67936 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TPM4P67936 EDF1-203ENST00000371649 790 ntTSL 2 BASIC15.89■□□□□ 0.13
TPM4P67936 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC15.89■□□□□ 0.13
TPM4P67936 INGX-202ENST00000489074 768 ntBASIC15.89■□□□□ 0.13
TPM4P67936 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC15.89■□□□□ 0.13
TPM4P67936 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC15.89■□□□□ 0.13
TPM4P67936 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC15.89■□□□□ 0.13
TPM4P67936 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC15.89■□□□□ 0.13
TPM4P67936 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
TPM4P67936 AC011603.2-203ENST00000547387 897 ntTSL 3 BASIC15.89■□□□□ 0.13
TPM4P67936 AQP6-203ENST00000551733 849 ntTSL 3 BASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms