Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SOX3P41225 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
SOX3P41225 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC13.37□□□□□ -0.27
SOX3P41225 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SOX3P41225 AC114271.1-201ENST00000612689 2813 ntBASIC13.37□□□□□ -0.27
SOX3P41225 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
SOX3P41225 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SOX3P41225 KRT8P21-201ENST00000430398 1491 ntBASIC13.37□□□□□ -0.27
SOX3P41225 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
SOX3P41225 BRPF1-205ENST00000433861 4304 ntTSL 2 BASIC13.37□□□□□ -0.27
SOX3P41225 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC13.37□□□□□ -0.27
SOX3P41225 HAGLR-202ENST00000416928 4235 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SOX3P41225 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC13.37□□□□□ -0.27
SOX3P41225 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC13.37□□□□□ -0.27
SOX3P41225 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SOX3P41225 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SOX3P41225 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
SOX3P41225 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SOX3P41225 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SOX3P41225 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC13.37□□□□□ -0.27
SOX3P41225 EDF1-202ENST00000371648 809 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SOX3P41225 AL662890.1-201ENST00000396818 632 ntBASIC13.37□□□□□ -0.27
SOX3P41225 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC13.37□□□□□ -0.27
SOX3P41225 CMC1-204ENST00000423894 549 ntTSL 2 BASIC13.37□□□□□ -0.27
SOX3P41225 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC13.37□□□□□ -0.27
SOX3P41225 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
SOX3P41225 CCNC-217ENST00000523985 958 ntTSL 2 BASIC13.37□□□□□ -0.27
SOX3P41225 AC003686.1-201ENST00000550956 1034 ntBASIC13.37□□□□□ -0.27
SOX3P41225 SNHG14-213ENST00000551077 638 ntTSL 5 BASIC13.37□□□□□ -0.27
SOX3P41225 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC13.37□□□□□ -0.27
SOX3P41225 SORD2P-201ENST00000558556 1069 ntBASIC13.37□□□□□ -0.27
SOX3P41225 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC13.37□□□□□ -0.27
SOX3P41225 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC13.37□□□□□ -0.27
SOX3P41225 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC13.37□□□□□ -0.27
SOX3P41225 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC13.37□□□□□ -0.27
SOX3P41225 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC13.37□□□□□ -0.27
SOX3P41225 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SOX3P41225 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC13.37□□□□□ -0.27
SOX3P41225 GPR4-201ENST00000323040 3048 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SOX3P41225 ENG-204ENST00000480266 2804 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
SOX3P41225 PLEKHB2-205ENST00000409279 2488 ntAPPRIS ALT1 TSL 2 BASIC13.37□□□□□ -0.27
SOX3P41225 OXA1L-202ENST00000358043 1750 ntTSL 2 BASIC13.37□□□□□ -0.27
SOX3P41225 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SOX3P41225 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
SOX3P41225 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
SOX3P41225 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC13.37□□□□□ -0.27
SOX3P41225 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SOX3P41225 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC13.37□□□□□ -0.27
SOX3P41225 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SOX3P41225 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
SOX3P41225 DLK1-201ENST00000331224 1324 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
SOX3P41225 AHCYP4-201ENST00000419201 1315 ntBASIC13.37□□□□□ -0.27
SOX3P41225 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC13.37□□□□□ -0.27
SOX3P41225 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
SOX3P41225 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
SOX3P41225 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC13.37□□□□□ -0.27
SOX3P41225 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SOX3P41225 GP1BA-202ENST00000611961 2339 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
SOX3P41225 CETP-203ENST00000566128 1733 ntTSL 5 BASIC13.36□□□□□ -0.27
SOX3P41225 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC13.36□□□□□ -0.27
SOX3P41225 PGBD2-202ENST00000355360 2879 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
SOX3P41225 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC13.36□□□□□ -0.27
SOX3P41225 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SOX3P41225 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC13.36□□□□□ -0.27
SOX3P41225 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SOX3P41225 C7orf72-201ENST00000297001 2028 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
SOX3P41225 TUNAR-201ENST00000503525 3197 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SOX3P41225 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC13.36□□□□□ -0.27
SOX3P41225 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SOX3P41225 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SOX3P41225 OR2R1P-201ENST00000441404 914 ntBASIC13.36□□□□□ -0.27
SOX3P41225 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC13.36□□□□□ -0.27
SOX3P41225 ST13P19-201ENST00000442505 1124 ntBASIC13.36□□□□□ -0.27
SOX3P41225 AC135178.1-201ENST00000458568 537 ntTSL 3 BASIC13.36□□□□□ -0.27
SOX3P41225 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC13.36□□□□□ -0.27
SOX3P41225 AC024681.1-201ENST00000521917 487 ntBASIC13.36□□□□□ -0.27
SOX3P41225 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC13.36□□□□□ -0.27
SOX3P41225 PGAM1P5-201ENST00000548011 764 ntBASIC13.36□□□□□ -0.27
SOX3P41225 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC13.36□□□□□ -0.27
SOX3P41225 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC13.36□□□□□ -0.27
SOX3P41225 MIR3619-201ENST00000579667 83 ntBASIC13.36□□□□□ -0.27
SOX3P41225 DRG2-220ENST00000583355 891 ntTSL 3 BASIC13.36□□□□□ -0.27
SOX3P41225 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC13.36□□□□□ -0.27
SOX3P41225 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC13.36□□□□□ -0.27
SOX3P41225 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
SOX3P41225 ZDHHC6-202ENST00000369405 2170 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
SOX3P41225 ATL2-210ENST00000452935 2199 ntTSL 2 BASIC13.36□□□□□ -0.27
SOX3P41225 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SOX3P41225 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SOX3P41225 THUMPD3-AS1-212ENST00000520447 1809 ntTSL 5 BASIC13.36□□□□□ -0.27
SOX3P41225 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC13.36□□□□□ -0.27
SOX3P41225 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC13.36□□□□□ -0.27
SOX3P41225 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC13.36□□□□□ -0.27
SOX3P41225 NICN1-201ENST00000273598 2616 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SOX3P41225 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SOX3P41225 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
SOX3P41225 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
SOX3P41225 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC13.36□□□□□ -0.27
SOX3P41225 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
SOX3P41225 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms