Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 TBC1D27-202ENST00000424239 1573 ntBASIC14.85□□□□□ -0.03
BDNFP23560 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
BDNFP23560 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
BDNFP23560 AFDN-205ENST00000392108 6812 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
BDNFP23560 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC14.85□□□□□ -0.03
BDNFP23560 C9orf3-202ENST00000297979 2820 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
BDNFP23560 DCAF13-209ENST00000616836 2639 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
BDNFP23560 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
BDNFP23560 GABRA1-201ENST00000023897 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
BDNFP23560 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
BDNFP23560 AC004554.1-201ENST00000422830 1468 ntBASIC14.85□□□□□ -0.03
BDNFP23560 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
BDNFP23560 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
BDNFP23560 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
BDNFP23560 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
BDNFP23560 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
BDNFP23560 IGHV1-3-201ENST00000390595 395 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
BDNFP23560 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC14.85□□□□□ -0.03
BDNFP23560 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
BDNFP23560 RN7SKP109-201ENST00000410592 316 ntBASIC14.85□□□□□ -0.03
BDNFP23560 RPSAP31-201ENST00000416648 895 ntBASIC14.85□□□□□ -0.03
BDNFP23560 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
BDNFP23560 AC096649.1-201ENST00000449168 497 ntTSL 3 BASIC14.85□□□□□ -0.03
BDNFP23560 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC14.85□□□□□ -0.03
BDNFP23560 RNA5SP417-201ENST00000516459 108 ntBASIC14.85□□□□□ -0.03
BDNFP23560 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
BDNFP23560 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC14.85□□□□□ -0.03
BDNFP23560 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC14.85□□□□□ -0.03
BDNFP23560 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
BDNFP23560 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC14.85□□□□□ -0.03
BDNFP23560 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC14.85□□□□□ -0.03
BDNFP23560 MANEAL-201ENST00000329006 1930 ntTSL 2 BASIC14.85□□□□□ -0.03
BDNFP23560 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
BDNFP23560 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
BDNFP23560 GLB1L-202ENST00000392089 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
BDNFP23560 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC14.85□□□□□ -0.03
BDNFP23560 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC14.85□□□□□ -0.03
BDNFP23560 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
BDNFP23560 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
BDNFP23560 BIN3-202ENST00000399977 1340 ntTSL 2 BASIC14.85□□□□□ -0.03
BDNFP23560 DACT3-AS1-201ENST00000500689 1304 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
BDNFP23560 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
BDNFP23560 FAM167A-AS1-203ENST00000624614 1357 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
BDNFP23560 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
BDNFP23560 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
BDNFP23560 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
BDNFP23560 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC14.84□□□□□ -0.03
BDNFP23560 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
BDNFP23560 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
BDNFP23560 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
BDNFP23560 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
BDNFP23560 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
BDNFP23560 RCC2P1-201ENST00000452257 1476 ntBASIC14.84□□□□□ -0.03
BDNFP23560 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC14.84□□□□□ -0.03
BDNFP23560 LY86-201ENST00000230568 559 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
BDNFP23560 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
BDNFP23560 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
BDNFP23560 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC14.84□□□□□ -0.03
BDNFP23560 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
BDNFP23560 RANGRF-202ENST00000407006 1074 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
BDNFP23560 PEX13-203ENST00000414712 1014 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
BDNFP23560 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC14.84□□□□□ -0.03
BDNFP23560 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
BDNFP23560 AL354861.1-201ENST00000445213 355 ntBASIC14.84□□□□□ -0.03
BDNFP23560 RGS5-216ENST00000449680 788 ntTSL 3 BASIC14.84□□□□□ -0.03
BDNFP23560 GRPEL2P1-201ENST00000453145 339 ntBASIC14.84□□□□□ -0.03
BDNFP23560 AL355803.1-201ENST00000455524 188 ntTSL 2 BASIC14.84□□□□□ -0.03
BDNFP23560 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC14.84□□□□□ -0.03
BDNFP23560 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC14.84□□□□□ -0.03
BDNFP23560 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC14.84□□□□□ -0.03
BDNFP23560 MIR4265-201ENST00000582152 99 ntBASIC14.84□□□□□ -0.03
BDNFP23560 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC14.84□□□□□ -0.03
BDNFP23560 AP000322.3-201ENST00000608665 388 ntBASIC14.84□□□□□ -0.03
BDNFP23560 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
BDNFP23560 CALCB-203ENST00000533448 2097 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
BDNFP23560 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
BDNFP23560 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
BDNFP23560 TFDP1-201ENST00000375370 2648 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
BDNFP23560 OXA1L-212ENST00000604262 1571 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
BDNFP23560 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
BDNFP23560 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
BDNFP23560 ST20-AS1-201ENST00000560255 4223 ntBASIC14.84□□□□□ -0.03
BDNFP23560 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
BDNFP23560 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
BDNFP23560 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
BDNFP23560 TCHH-201ENST00000368804 6900 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
BDNFP23560 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
BDNFP23560 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC14.84□□□□□ -0.03
BDNFP23560 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
BDNFP23560 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
BDNFP23560 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC14.84□□□□□ -0.03
BDNFP23560 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC14.84□□□□□ -0.03
BDNFP23560 LIPA-205ENST00000456827 2527 ntTSL 3 BASIC14.84□□□□□ -0.03
BDNFP23560 FCRL6-201ENST00000321935 1997 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
BDNFP23560 TBCE-201ENST00000366601 1966 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
BDNFP23560 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
BDNFP23560 TMPRSS6-203ENST00000406725 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
BDNFP23560 AC138761.6-201ENST00000583997 1423 ntBASIC14.83□□□□□ -0.03
BDNFP23560 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC14.83□□□□□ -0.03
BDNFP23560 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms