Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 AL591122.2-201ENST00000624125 1853 ntBASIC12.99□□□□□ -0.33
NKX2-2O95096 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC12.99□□□□□ -0.33
NKX2-2O95096 AC073869.1-201ENST00000415574 2762 ntBASIC12.99□□□□□ -0.33
NKX2-2O95096 NIPSNAP3A-201ENST00000374767 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-2O95096 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC12.99□□□□□ -0.33
NKX2-2O95096 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-2O95096 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-2O95096 PHB-210ENST00000511832 1509 ntTSL 2 BASIC12.99□□□□□ -0.33
NKX2-2O95096 AL133338.1-201ENST00000565695 1517 ntBASIC12.99□□□□□ -0.33
NKX2-2O95096 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-2O95096 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-2O95096 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC12.99□□□□□ -0.33
NKX2-2O95096 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC12.99□□□□□ -0.33
NKX2-2O95096 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-2O95096 KRT18P9-201ENST00000604826 1300 ntBASIC12.99□□□□□ -0.33
NKX2-2O95096 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC12.99□□□□□ -0.33
NKX2-2O95096 VAMP2-201ENST00000316509 2153 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-2O95096 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-2O95096 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC12.99□□□□□ -0.33
NKX2-2O95096 FAM163B-201ENST00000356873 1131 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-2O95096 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-2O95096 NUDT2-203ENST00000379158 1075 ntAPPRIS P1 TSL 3 BASIC12.99□□□□□ -0.33
NKX2-2O95096 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-2O95096 LINC00265-2P-201ENST00000413372 782 ntBASIC12.99□□□□□ -0.33
NKX2-2O95096 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC12.99□□□□□ -0.33
NKX2-2O95096 PDIA3P2-201ENST00000428073 158 ntBASIC12.99□□□□□ -0.33
NKX2-2O95096 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC12.99□□□□□ -0.33
NKX2-2O95096 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC12.99□□□□□ -0.33
NKX2-2O95096 SPATA24-205ENST00000509959 641 ntTSL 5 BASIC12.99□□□□□ -0.33
NKX2-2O95096 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC12.99□□□□□ -0.33
NKX2-2O95096 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
NKX2-2O95096 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-2O95096 PIN1-207ENST00000588695 648 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
NKX2-2O95096 EAF1-AS1-208ENST00000608408 770 ntTSL 5 BASIC12.99□□□□□ -0.33
NKX2-2O95096 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-2O95096 TRMT10B-202ENST00000377753 2027 ntTSL 2 BASIC12.99□□□□□ -0.33
NKX2-2O95096 TGFBRAP1-201ENST00000258449 2827 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
NKX2-2O95096 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-2O95096 SMIM12-206ENST00000521580 3454 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-2O95096 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-2O95096 C7orf57-204ENST00000435376 1925 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-2O95096 C7orf57-206ENST00000539619 1927 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
NKX2-2O95096 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-2O95096 PGAP2-203ENST00000396986 1837 ntTSL 2 BASIC12.99□□□□□ -0.33
NKX2-2O95096 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-2O95096 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-2O95096 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-2O95096 MARK2P16-201ENST00000605714 1723 ntBASIC12.99□□□□□ -0.33
NKX2-2O95096 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC12.99□□□□□ -0.33
NKX2-2O95096 PLEKHG6-201ENST00000011684 2881 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-2O95096 EPB42-210ENST00000622454 2227 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
NKX2-2O95096 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
NKX2-2O95096 DLGAP1-202ENST00000400145 2188 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
NKX2-2O95096 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
NKX2-2O95096 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC12.98□□□□□ -0.33
NKX2-2O95096 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
NKX2-2O95096 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
NKX2-2O95096 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC12.98□□□□□ -0.33
NKX2-2O95096 ACTL7A-201ENST00000333999 1494 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
NKX2-2O95096 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC12.98□□□□□ -0.33
NKX2-2O95096 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
NKX2-2O95096 SALL2-205ENST00000611430 1466 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
NKX2-2O95096 AL772337.1-201ENST00000399186 2014 ntTSL 5 BASIC12.98□□□□□ -0.33
NKX2-2O95096 FXR1-214ENST00000480918 1996 ntTSL 2 BASIC12.98□□□□□ -0.33
NKX2-2O95096 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
NKX2-2O95096 LILRB2-202ENST00000391746 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
NKX2-2O95096 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
NKX2-2O95096 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC12.98□□□□□ -0.33
NKX2-2O95096 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
NKX2-2O95096 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC12.98□□□□□ -0.33
NKX2-2O95096 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
NKX2-2O95096 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
NKX2-2O95096 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
NKX2-2O95096 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC12.98□□□□□ -0.33
NKX2-2O95096 F2-205ENST00000530231 1849 ntTSL 5 BASIC12.98□□□□□ -0.33
NKX2-2O95096 NXF1-201ENST00000294172 2346 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
NKX2-2O95096 BCL2L11-202ENST00000337565 720 ntTSL 5 BASIC12.98□□□□□ -0.33
NKX2-2O95096 NUDT1-202ENST00000343985 771 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
NKX2-2O95096 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
NKX2-2O95096 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC12.98□□□□□ -0.33
NKX2-2O95096 NUDT2-202ENST00000379155 1002 ntAPPRIS P1 TSL 3 BASIC12.98□□□□□ -0.33
NKX2-2O95096 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
NKX2-2O95096 AC026320.2-201ENST00000434379 478 ntBASIC12.98□□□□□ -0.33
NKX2-2O95096 CCDC18-AS1-219ENST00000451302 1212 ntTSL 3 BASIC12.98□□□□□ -0.33
NKX2-2O95096 AL353637.1-201ENST00000451571 732 ntBASIC12.98□□□□□ -0.33
NKX2-2O95096 AC012618.1-201ENST00000461223 412 ntBASIC12.98□□□□□ -0.33
NKX2-2O95096 SERGEF-208ENST00000528200 1264 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
NKX2-2O95096 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC12.98□□□□□ -0.33
NKX2-2O95096 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
NKX2-2O95096 STUB1-204ENST00000564370 875 ntTSL 2 BASIC12.98□□□□□ -0.33
NKX2-2O95096 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC12.98□□□□□ -0.33
NKX2-2O95096 AC026803.1-201ENST00000569130 274 ntBASIC12.98□□□□□ -0.33
NKX2-2O95096 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC12.98□□□□□ -0.33
NKX2-2O95096 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC12.98□□□□□ -0.33
NKX2-2O95096 GPR182-203ENST00000622922 591 ntBASIC12.98□□□□□ -0.33
NKX2-2O95096 CR383656.2-201ENST00000548656 2254 ntBASIC12.98□□□□□ -0.33
NKX2-2O95096 SEMA7A-202ENST00000542748 3228 ntTSL 5 BASIC12.98□□□□□ -0.33
NKX2-2O95096 HOXC4-202ENST00000430889 1666 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
NKX2-2O95096 BIRC2-208ENST00000532672 2617 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
NKX2-2O95096 INMT-201ENST00000013222 2559 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms