Protein–RNA interactions for Protein: Q9BYV6

TRIM55, Tripartite motif-containing protein 55, humanhuman

Predictions only

Length 548 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55Q9BYV6 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 AC023310.1-201ENST00000554836 735 ntBASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 KIF12-201ENST00000374118 2001 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 AC093899.2-201ENST00000513963 1935 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 GRK3-201ENST00000324198 9103 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 LMBR1-201ENST00000353442 7997 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 MARK2P9-201ENST00000430958 1727 ntBASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 FP325330.2-201ENST00000624219 5630 ntBASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 CRISPLD2-209ENST00000567845 2178 ntAPPRIS ALT1 TSL 5 BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 OSBPL9-201ENST00000361556 2721 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 GGT1-203ENST00000400382 2628 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 BORCS8-202ENST00000462790 1429 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 EPN2-210ENST00000571254 1883 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 GAS6-AS1-201ENST00000458001 7169 ntTSL 5 BASIC14.4□□□□□ -0.1
TRIM55Q9BYV6 THEMIS2-201ENST00000328928 2337 ntTSL 2 BASIC14.4□□□□□ -0.11
TRIM55Q9BYV6 AC092143.1-201ENST00000556922 2776 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 ARHGAP45-203ENST00000543365 3750 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 UNC5CL-201ENST00000244565 3136 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 AC040174.1-201ENST00000563003 2571 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 C1orf228-218ENST00000458657 1818 ntAPPRIS P2 TSL 5 BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 TSC22D3-204ENST00000372384 2199 ntTSL 2 BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 LIMK1-208ENST00000538333 2170 ntTSL 2 BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 ASAP3-202ENST00000437606 2865 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 ZNF202-207ENST00000530393 3564 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 HK2-201ENST00000290573 5772 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 RPS15-201ENST00000233609 534 ntTSL 2 BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 AC006033.1-201ENST00000440505 426 ntBASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 GCOM2-201ENST00000509133 1104 ntBASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 VPS18-202ENST00000558474 873 ntTSL 3 BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 HNRNPA1P48-202ENST00000565308 961 ntBASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 RPS15-205ENST00000586686 562 ntTSL 5 BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 RPS15-208ENST00000591804 711 ntTSL 5 BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 KLK3-207ENST00000595952 969 ntTSL 3 BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 AC138951.2-201ENST00000623455 1161 ntBASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 RIN3-212ENST00000620541 3617 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 LDB3-207ENST00000542786 1889 ntTSL 2 BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 PGAM1P5-202ENST00000552554 2148 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 OR6F1-204ENST00000641470 1762 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 CACNA1G-208ENST00000442258 7226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 ALOX15B-202ENST00000380183 2739 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 HYOU1-220ENST00000617285 4529 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 KIAA1217-209ENST00000430453 5962 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 KIAA1217-211ENST00000458595 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 GPC6-201ENST00000377047 6467 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 SMARCA4-204ENST00000444061 4938 ntAPPRIS ALT1 TSL 5 BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 PASK-201ENST00000234040 4572 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 PWWP2A-202ENST00000456329 3991 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
TRIM55Q9BYV6 F2-205ENST00000530231 1849 ntTSL 5 BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 OS9-206ENST00000435406 2346 ntTSL 2 BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 AC024075.2-201ENST00000598112 1473 ntBASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 USF1-202ENST00000368020 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 ATP6V0A4-202ENST00000353492 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 ABI2-201ENST00000261016 6634 ntTSL 2 BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 ABI2-203ENST00000261018 6638 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TRIM55Q9BYV6 C3orf18-206ENST00000449241 2365 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 60.2 ms