Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AKT3-IT1-201ENST00000417120 517 ntTSL 5 BASIC17.49■□□□□ 0.39
SHANK3Q9BYB0 AL357558.2-201ENST00000431915 425 ntTSL 2 BASIC17.49■□□□□ 0.39
SHANK3Q9BYB0 AC092656.1-202ENST00000515843 998 ntTSL 4 BASIC17.49■□□□□ 0.39
SHANK3Q9BYB0 AL583722.3-201ENST00000553433 503 ntTSL 4 BASIC17.49■□□□□ 0.39
SHANK3Q9BYB0 PEX11A-204ENST00000561224 529 ntTSL 4 BASIC17.49■□□□□ 0.39
SHANK3Q9BYB0 ABCD1P3-201ENST00000562927 605 ntBASIC17.49■□□□□ 0.39
SHANK3Q9BYB0 PILRB-213ENST00000609309 993 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SHANK3Q9BYB0 SP140L-205ENST00000458341 1727 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SHANK3Q9BYB0 DLGAP1-202ENST00000400145 2188 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SHANK3Q9BYB0 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SHANK3Q9BYB0 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC17.49■□□□□ 0.39
SHANK3Q9BYB0 RECQL5-218ENST00000584999 1922 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SHANK3Q9BYB0 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
SHANK3Q9BYB0 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
SHANK3Q9BYB0 CNOT7-211ENST00000523917 1885 ntTSL 2 BASIC17.49■□□□□ 0.39
SHANK3Q9BYB0 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SHANK3Q9BYB0 CDCA7L-201ENST00000356195 2915 ntTSL 2 BASIC17.49■□□□□ 0.39
SHANK3Q9BYB0 SPATS2-203ENST00000547865 1810 ntTSL 2 BASIC17.48■□□□□ 0.39
SHANK3Q9BYB0 HOXA1-202ENST00000355633 2016 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SHANK3Q9BYB0 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SHANK3Q9BYB0 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SHANK3Q9BYB0 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
SHANK3Q9BYB0 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC17.48■□□□□ 0.39
SHANK3Q9BYB0 AC020741.1-201ENST00000381217 2079 ntTSL 2 BASIC17.48■□□□□ 0.39
SHANK3Q9BYB0 ARF4-201ENST00000303436 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SHANK3Q9BYB0 LINC00449-201ENST00000366259 872 ntTSL 2 BASIC17.48■□□□□ 0.39
SHANK3Q9BYB0 IQCF4-203ENST00000428561 420 ntBASIC17.48■□□□□ 0.39
SHANK3Q9BYB0 AC093106.1-201ENST00000437271 352 ntBASIC17.48■□□□□ 0.39
SHANK3Q9BYB0 FAM157A-201ENST00000437428 1141 ntTSL 3 BASIC17.48■□□□□ 0.39
SHANK3Q9BYB0 AC007881.1-201ENST00000437460 187 ntBASIC17.48■□□□□ 0.39
SHANK3Q9BYB0 AP000343.1-201ENST00000440602 385 ntBASIC17.48■□□□□ 0.39
SHANK3Q9BYB0 AC010136.1-201ENST00000450996 568 ntTSL 4 BASIC17.48■□□□□ 0.39
SHANK3Q9BYB0 AC008750.2-201ENST00000526996 627 ntTSL 3 BASIC17.48■□□□□ 0.39
SHANK3Q9BYB0 TBX5-AS1-202ENST00000531024 766 ntTSL 3 BASIC17.48■□□□□ 0.39
SHANK3Q9BYB0 AL139099.3-201ENST00000556657 401 ntTSL 3 BASIC17.48■□□□□ 0.39
SHANK3Q9BYB0 ACTBP9-201ENST00000587663 1099 ntBASIC17.48■□□□□ 0.39
SHANK3Q9BYB0 SMYD5-209ENST00000629411 246 ntTSL 5 BASIC17.48■□□□□ 0.39
SHANK3Q9BYB0 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC17.48■□□□□ 0.39
SHANK3Q9BYB0 MYB-201ENST00000316528 3571 ntTSL 5 BASIC17.48■□□□□ 0.39
SHANK3Q9BYB0 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SHANK3Q9BYB0 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
SHANK3Q9BYB0 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
SHANK3Q9BYB0 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SHANK3Q9BYB0 KIR2DL3-201ENST00000342376 1590 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SHANK3Q9BYB0 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SHANK3Q9BYB0 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
SHANK3Q9BYB0 CFAP20-201ENST00000262498 1354 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SHANK3Q9BYB0 ANKLE2-210ENST00000542657 2446 ntTSL 2 BASIC17.48■□□□□ 0.39
SHANK3Q9BYB0 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
SHANK3Q9BYB0 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 NDUFC2-201ENST00000281031 2518 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 MRRF-201ENST00000297908 1841 ntTSL 2 BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 STUM-202ENST00000366789 4093 ntAPPRIS ALT1 TSL 5 BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 SIRT5-203ENST00000379262 2339 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 EDF1-201ENST00000224073 640 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 KRTAP10-11-201ENST00000334670 1237 ntAPPRIS P1 BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 RNA5SP407-201ENST00000410275 110 ntBASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 LINC02036-201ENST00000415869 910 ntTSL 3 BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 PRSS45-201ENST00000442359 687 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 RPL3P9-201ENST00000463217 1183 ntBASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 AL450346.2-201ENST00000495602 1024 ntBASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 AC114939.1-201ENST00000520980 514 ntTSL 5 BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 AC133555.4-201ENST00000569081 152 ntBASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 C19orf53-202ENST00000588234 873 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 POU5F1-207ENST00000606567 1236 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 SDHD-214ENST00000614349 516 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 AC010601.2-201ENST00000623060 774 ntBASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 AC005609.1-201ENST00000625195 617 ntTSL 5 BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 ZMIZ1-AS1-203ENST00000456353 2878 ntTSL 2 BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 GAPDH-205ENST00000396861 1348 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 RPL4P6-201ENST00000438116 1304 ntBASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 LIMS1-204ENST00000409441 1627 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 AC024475.2-201ENST00000312173 879 ntBASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 TMEM79-202ENST00000357501 975 ntTSL 3 BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 C9orf24-202ENST00000379124 648 ntTSL 3 BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 MRPL48-203ENST00000398483 1058 ntTSL 3 BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 AC005822.1-201ENST00000414124 1034 ntBASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 AL162151.1-201ENST00000423922 561 ntTSL 4 BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 RNASEH2CP1-201ENST00000454281 502 ntBASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 AF186996.6-201ENST00000485294 149 ntBASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 HNRNPA1P55-201ENST00000505935 955 ntBASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 MIEF2-206ENST00000578174 589 ntTSL 4 BASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 AL031768.1-201ENST00000606542 701 ntBASIC17.47■□□□□ 0.39
SHANK3Q9BYB0 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms