Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 CMTM1-209ENST00000528324 749 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 CMTM1-217ENST00000533666 493 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 VASH1-AS1-202ENST00000556072 1684 ntTSL 2 BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 SPATA12-201ENST00000334325 2413 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 MARK2P9-201ENST00000430958 1727 ntBASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 DEK-202ENST00000397239 3427 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 FSTL4-207ENST00000621681 2660 ntTSL 5 BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 AC008620.2-201ENST00000510294 1569 ntBASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 LINC02135-201ENST00000599486 2065 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 TBC1D3E-201ENST00000621587 2076 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 B4GALT6-201ENST00000237019 2128 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 RNF214-201ENST00000300650 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 HADH-202ENST00000403312 1752 ntTSL 5 BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 OR2K2-202ENST00000374428 1038 ntBASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 LINC00265-2P-201ENST00000413372 782 ntBASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 ISCA2P1-201ENST00000425548 448 ntBASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 CEP164P1-201ENST00000455142 418 ntBASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 CRADD-205ENST00000548483 1056 ntTSL 2 BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 RGS9-201ENST00000262406 2375 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 GOLGA8IP-201ENST00000340249 1899 ntTSL 2 BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 IL1RL2-201ENST00000264257 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 AC004554.1-201ENST00000422830 1468 ntBASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
SHROOM3Q8TF72 AL445250.1-201ENST00000641671 2259 ntBASIC14.33□□□□□ -0.11
SHROOM3Q8TF72 MFSD11-211ENST00000588460 3612 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.11
SHROOM3Q8TF72 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.11
SHROOM3Q8TF72 NAALADL1-201ENST00000340252 2376 ntTSL 5 BASIC14.33□□□□□ -0.11
SHROOM3Q8TF72 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC14.33□□□□□ -0.11
SHROOM3Q8TF72 TMPRSS3-204ENST00000433957 2403 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.11
SHROOM3Q8TF72 STX3-207ENST00000633708 3111 ntTSL 5 BASIC14.33□□□□□ -0.11
SHROOM3Q8TF72 KAT7-204ENST00000454930 1774 ntTSL 2 BASIC14.33□□□□□ -0.11
SHROOM3Q8TF72 Z98885.3-201ENST00000624882 1757 ntBASIC14.33□□□□□ -0.11
SHROOM3Q8TF72 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
SHROOM3Q8TF72 IL1RN-201ENST00000259206 1810 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
SHROOM3Q8TF72 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
SHROOM3Q8TF72 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.11
SHROOM3Q8TF72 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC14.33□□□□□ -0.11
SHROOM3Q8TF72 B3GNT5-202ENST00000460419 3368 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.11
SHROOM3Q8TF72 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 MIR645-201ENST00000385283 94 ntBASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 NDUFB10P1-201ENST00000567319 521 ntBASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 TBC1D3J-201ENST00000620719 1426 ntBASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 TRDMT1-203ENST00000377799 3527 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 METTL17-221ENST00000556670 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 ATP6V0A1-206ENST00000585525 2679 ntTSL 2 BASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 CSF2RB-203ENST00000406230 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 ELAVL4-207ENST00000448907 1951 ntTSL 2 BASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 FAM86C1-201ENST00000346333 2010 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 CRISPLD2-209ENST00000567845 2178 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 FAM129B-202ENST00000373314 3760 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 ACADM-218ENST00000541113 2535 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 AC026316.1-201ENST00000398900 414 ntBASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 AC011742.3-201ENST00000439053 820 ntBASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 AC114947.1-202ENST00000514136 344 ntBASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 RMDN1-218ENST00000523911 950 ntTSL 2 BASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 WDR7-208ENST00000589935 544 ntTSL 4 BASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
SHROOM3Q8TF72 NCF4-202ENST00000397147 1641 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 111.2 ms