Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 ACTG1P2-201ENST00000415776 1125 ntBASIC14.79□□□□□ -0.04
HDAC4P56524 DEF8-202ENST00000418391 852 ntTSL 2 BASIC14.79□□□□□ -0.04
HDAC4P56524 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC4P56524 ACTG1P11-201ENST00000425411 1125 ntBASIC14.79□□□□□ -0.04
HDAC4P56524 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC4P56524 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
HDAC4P56524 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC4P56524 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC14.79□□□□□ -0.04
HDAC4P56524 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC4P56524 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC4P56524 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC4P56524 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC14.79□□□□□ -0.04
HDAC4P56524 AC116345.2-201ENST00000512837 523 ntBASIC14.79□□□□□ -0.04
HDAC4P56524 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC14.79□□□□□ -0.04
HDAC4P56524 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC14.79□□□□□ -0.04
HDAC4P56524 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC14.79□□□□□ -0.04
HDAC4P56524 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
HDAC4P56524 AC015909.3-201ENST00000572855 1794 ntBASIC14.79□□□□□ -0.04
HDAC4P56524 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC4P56524 MIR4525-201ENST00000580000 75 ntBASIC14.79□□□□□ -0.04
HDAC4P56524 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC4P56524 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC14.79□□□□□ -0.04
HDAC4P56524 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC14.79□□□□□ -0.04
HDAC4P56524 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
HDAC4P56524 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
HDAC4P56524 GPR182-203ENST00000622922 591 ntBASIC14.79□□□□□ -0.04
HDAC4P56524 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC4P56524 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC4P56524 DLL4-201ENST00000249749 3372 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC4P56524 AL365181.3-201ENST00000605886 3222 ntBASIC14.79□□□□□ -0.04
HDAC4P56524 SLC9B2-202ENST00000394785 3126 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
HDAC4P56524 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC4P56524 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC4P56524 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
HDAC4P56524 STK3-218ENST00000617590 2485 ntTSL 5 BASIC14.78□□□□□ -0.04
HDAC4P56524 HMGCS2-201ENST00000369406 2428 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HDAC4P56524 ENDOV-207ENST00000518907 2418 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HDAC4P56524 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HDAC4P56524 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC14.78□□□□□ -0.04
HDAC4P56524 AC068760.1-201ENST00000493579 1953 ntBASIC14.78□□□□□ -0.04
HDAC4P56524 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
HDAC4P56524 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HDAC4P56524 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HDAC4P56524 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC14.78□□□□□ -0.04
HDAC4P56524 UBL4B-201ENST00000334179 1478 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
HDAC4P56524 ERLIN1-202ENST00000407654 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HDAC4P56524 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC14.78□□□□□ -0.04
HDAC4P56524 TMEM176B-204ENST00000447204 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HDAC4P56524 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HDAC4P56524 TUBB4AP1-201ENST00000450755 1325 ntBASIC14.78□□□□□ -0.04
HDAC4P56524 C1orf159-201ENST00000379319 1097 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
HDAC4P56524 TMEM216-202ENST00000398979 908 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HDAC4P56524 AL139125.1-201ENST00000420395 557 ntTSL 3 BASIC14.78□□□□□ -0.04
HDAC4P56524 CMC1-204ENST00000423894 549 ntTSL 2 BASIC14.78□□□□□ -0.04
HDAC4P56524 SPTLC1P5-201ENST00000450718 252 ntBASIC14.78□□□□□ -0.04
HDAC4P56524 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC14.78□□□□□ -0.04
HDAC4P56524 ARTN-209ENST00000479128 471 ntTSL 3 BASIC14.78□□□□□ -0.04
HDAC4P56524 GOLGA2P8-201ENST00000505201 779 ntBASIC14.78□□□□□ -0.04
HDAC4P56524 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC14.78□□□□□ -0.04
HDAC4P56524 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC14.78□□□□□ -0.04
HDAC4P56524 RN7SL774P-201ENST00000577467 290 ntBASIC14.78□□□□□ -0.04
HDAC4P56524 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
HDAC4P56524 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC14.78□□□□□ -0.04
HDAC4P56524 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC14.78□□□□□ -0.04
HDAC4P56524 ZNF135-205ENST00000511556 2253 ntAPPRIS P3 TSL 2 BASIC14.78□□□□□ -0.04
HDAC4P56524 ZMYND15-206ENST00000592813 2274 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HDAC4P56524 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
HDAC4P56524 CCR7-201ENST00000246657 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HDAC4P56524 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC14.78□□□□□ -0.04
HDAC4P56524 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HDAC4P56524 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
HDAC4P56524 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
HDAC4P56524 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
HDAC4P56524 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HDAC4P56524 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
HDAC4P56524 FBXL19-201ENST00000338343 3965 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
HDAC4P56524 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC14.78□□□□□ -0.04
HDAC4P56524 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HDAC4P56524 E2F7-201ENST00000322886 5740 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HDAC4P56524 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
HDAC4P56524 PATL2-208ENST00000560780 1863 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
HDAC4P56524 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC14.78□□□□□ -0.04
HDAC4P56524 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
HDAC4P56524 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
HDAC4P56524 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC14.77□□□□□ -0.04
HDAC4P56524 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
HDAC4P56524 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
HDAC4P56524 LSS-211ENST00000522411 2523 ntTSL 2 BASIC14.77□□□□□ -0.04
HDAC4P56524 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HDAC4P56524 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC14.77□□□□□ -0.04
HDAC4P56524 LIMD2-201ENST00000259006 3193 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HDAC4P56524 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC14.77□□□□□ -0.04
HDAC4P56524 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC14.77□□□□□ -0.04
HDAC4P56524 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
HDAC4P56524 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HDAC4P56524 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
HDAC4P56524 TUBGCP6-201ENST00000248846 5612 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HDAC4P56524 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
HDAC4P56524 USP49-203ENST00000394253 9034 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
HDAC4P56524 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC14.77□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms