Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 XRRA1-207ENST00000527087 2505 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
HOXA1P49639 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC11.84□□□□□ -0.51
HOXA1P49639 HSPA8P5-201ENST00000456928 2069 ntBASIC11.84□□□□□ -0.51
HOXA1P49639 RPGRIP1-202ENST00000400017 3940 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
HOXA1P49639 SPG11-203ENST00000535302 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
HOXA1P49639 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HOXA1P49639 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
HOXA1P49639 B9D1-203ENST00000395615 805 ntTSL 3 BASIC11.84□□□□□ -0.51
HOXA1P49639 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
HOXA1P49639 AL442647.2-201ENST00000429864 857 ntBASIC11.84□□□□□ -0.51
HOXA1P49639 BASP1P1-201ENST00000430708 665 ntBASIC11.84□□□□□ -0.51
HOXA1P49639 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
HOXA1P49639 EIF3FP3-201ENST00000434851 1086 ntBASIC11.84□□□□□ -0.51
HOXA1P49639 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
HOXA1P49639 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
HOXA1P49639 AC093004.1-201ENST00000508850 424 ntBASIC11.84□□□□□ -0.51
HOXA1P49639 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC11.84□□□□□ -0.51
HOXA1P49639 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
HOXA1P49639 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
HOXA1P49639 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HOXA1P49639 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HOXA1P49639 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC11.84□□□□□ -0.51
HOXA1P49639 AP001160.2-201ENST00000596071 487 ntBASIC11.84□□□□□ -0.51
HOXA1P49639 AC008761.3-201ENST00000624803 892 ntBASIC11.84□□□□□ -0.51
HOXA1P49639 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
HOXA1P49639 POU2AF1-201ENST00000393067 3295 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HOXA1P49639 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HOXA1P49639 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
HOXA1P49639 CCDC187-203ENST00000569961 3158 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
HOXA1P49639 SPAG5-AS1-201ENST00000414744 2143 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
HOXA1P49639 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
HOXA1P49639 HS1BP3-201ENST00000304031 2370 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HOXA1P49639 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
HOXA1P49639 DCAF11-204ENST00000446197 4299 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HOXA1P49639 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC11.84□□□□□ -0.51
HOXA1P49639 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HOXA1P49639 VASH2-203ENST00000366965 3572 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
HOXA1P49639 RGL4-209ENST00000612432 2649 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
HOXA1P49639 PITPNM3-202ENST00000421306 6945 ntAPPRIS ALT2 TSL 2 BASIC11.84□□□□□ -0.51
HOXA1P49639 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
HOXA1P49639 PLEKHB2-202ENST00000403716 4349 ntTSL 3 BASIC11.84□□□□□ -0.51
HOXA1P49639 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HOXA1P49639 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
HOXA1P49639 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
HOXA1P49639 PPARGC1B-202ENST00000360453 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
HOXA1P49639 PAF1-204ENST00000595564 1810 ntAPPRIS ALT2 TSL 2 BASIC11.83□□□□□ -0.51
HOXA1P49639 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
HOXA1P49639 APLP2-202ENST00000278756 3687 ntAPPRIS ALT2 TSL 2 BASIC11.83□□□□□ -0.51
HOXA1P49639 UBASH3A-203ENST00000398367 1733 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
HOXA1P49639 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC11.83□□□□□ -0.52
HOXA1P49639 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
HOXA1P49639 USP19-206ENST00000417901 4706 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
HOXA1P49639 PRKCG-201ENST00000263431 3133 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HOXA1P49639 DHX38-201ENST00000268482 4608 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HOXA1P49639 SDC3-201ENST00000336798 6392 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
HOXA1P49639 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HOXA1P49639 ABCB7-203ENST00000373394 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HOXA1P49639 RGS3-205ENST00000374134 2862 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
HOXA1P49639 CHD3-203ENST00000380358 7356 ntTSL 2 BASIC11.83□□□□□ -0.52
HOXA1P49639 EIF4G1-205ENST00000382330 5129 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
HOXA1P49639 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC11.83□□□□□ -0.52
HOXA1P49639 LINC00656-201ENST00000443744 1896 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
HOXA1P49639 IKZF1-211ENST00000440768 5511 ntTSL 5 BASIC11.83□□□□□ -0.52
HOXA1P49639 KIF9-207ENST00000444589 2791 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
HOXA1P49639 EPM2A-207ENST00000611340 2786 ntTSL 2 BASIC11.83□□□□□ -0.52
HOXA1P49639 SERPINH1-205ENST00000525876 2283 ntTSL 2 BASIC11.83□□□□□ -0.52
HOXA1P49639 MCFD2-212ENST00000444761 4169 ntTSL 2 BASIC11.83□□□□□ -0.52
HOXA1P49639 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HOXA1P49639 CIT-219ENST00000612548 1799 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
HOXA1P49639 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
HOXA1P49639 AC008125.1-201ENST00000548488 1538 ntTSL 5 BASIC11.83□□□□□ -0.52
HOXA1P49639 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
HOXA1P49639 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
HOXA1P49639 SERF2-209ENST00000409646 559 ntTSL 4 BASIC11.83□□□□□ -0.52
HOXA1P49639 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HOXA1P49639 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
HOXA1P49639 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC11.83□□□□□ -0.52
HOXA1P49639 FO681548.1-201ENST00000455617 1132 ntBASIC11.83□□□□□ -0.52
HOXA1P49639 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC11.83□□□□□ -0.52
HOXA1P49639 CD81-207ENST00000481687 890 ntTSL 2 BASIC11.83□□□□□ -0.52
HOXA1P49639 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
HOXA1P49639 REEP4-207ENST00000523293 913 ntTSL 3 BASIC11.83□□□□□ -0.52
HOXA1P49639 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC11.83□□□□□ -0.52
HOXA1P49639 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC11.83□□□□□ -0.52
HOXA1P49639 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC11.83□□□□□ -0.52
HOXA1P49639 AC131206.1-201ENST00000538078 1211 ntBASIC11.83□□□□□ -0.52
HOXA1P49639 AC124283.3-201ENST00000570869 594 ntBASIC11.83□□□□□ -0.52
HOXA1P49639 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
HOXA1P49639 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC11.83□□□□□ -0.52
HOXA1P49639 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC11.83□□□□□ -0.52
HOXA1P49639 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC11.83□□□□□ -0.52
HOXA1P49639 AC004790.1-201ENST00000612686 536 ntBASIC11.83□□□□□ -0.52
HOXA1P49639 AP005019.2-201ENST00000615104 511 ntBASIC11.83□□□□□ -0.52
HOXA1P49639 RGL4-202ENST00000401461 2420 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
HOXA1P49639 AGAP5-202ENST00000443782 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
HOXA1P49639 AGAP4-203ENST00000448048 2439 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
HOXA1P49639 AC124319.4-201ENST00000622931 2161 ntBASIC11.83□□□□□ -0.52
HOXA1P49639 ENO2-205ENST00000535366 2827 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HOXA1P49639 EBF1-201ENST00000313708 5250 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
HOXA1P49639 PLA1A-206ENST00000495992 1695 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms