Protein–RNA interactions for Protein: Q9Y6Z2

LINC01558, Uncharacterized protein encoded by LINC01558, humanhuman

Predictions only

Length 57 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01558Q9Y6Z2 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC11.78□□□□□ -0.52
LINC01558Q9Y6Z2 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC11.78□□□□□ -0.52
LINC01558Q9Y6Z2 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC11.78□□□□□ -0.52
LINC01558Q9Y6Z2 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
LINC01558Q9Y6Z2 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
LINC01558Q9Y6Z2 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.52
LINC01558Q9Y6Z2 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
LINC01558Q9Y6Z2 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
LINC01558Q9Y6Z2 ADM-207ENST00000530439 1839 ntTSL 2 BASIC11.77□□□□□ -0.52
LINC01558Q9Y6Z2 LETM1P2-201ENST00000597330 2178 ntBASIC11.77□□□□□ -0.53
LINC01558Q9Y6Z2 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
LINC01558Q9Y6Z2 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
LINC01558Q9Y6Z2 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC11.77□□□□□ -0.53
LINC01558Q9Y6Z2 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
LINC01558Q9Y6Z2 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
LINC01558Q9Y6Z2 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
LINC01558Q9Y6Z2 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC11.77□□□□□ -0.53
LINC01558Q9Y6Z2 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
LINC01558Q9Y6Z2 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
LINC01558Q9Y6Z2 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
LINC01558Q9Y6Z2 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC11.77□□□□□ -0.53
LINC01558Q9Y6Z2 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC11.77□□□□□ -0.53
LINC01558Q9Y6Z2 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
LINC01558Q9Y6Z2 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC11.77□□□□□ -0.53
LINC01558Q9Y6Z2 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
LINC01558Q9Y6Z2 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC11.76□□□□□ -0.53
LINC01558Q9Y6Z2 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC11.76□□□□□ -0.53
LINC01558Q9Y6Z2 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC01558Q9Y6Z2 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC01558Q9Y6Z2 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
LINC01558Q9Y6Z2 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC01558Q9Y6Z2 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC01558Q9Y6Z2 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC01558Q9Y6Z2 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC11.76□□□□□ -0.53
LINC01558Q9Y6Z2 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC11.76□□□□□ -0.53
LINC01558Q9Y6Z2 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC11.76□□□□□ -0.53
LINC01558Q9Y6Z2 AC026471.1-201ENST00000564629 3026 ntBASIC11.76□□□□□ -0.53
LINC01558Q9Y6Z2 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC01558Q9Y6Z2 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC11.75□□□□□ -0.53
LINC01558Q9Y6Z2 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC11.75□□□□□ -0.53
LINC01558Q9Y6Z2 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC01558Q9Y6Z2 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC01558Q9Y6Z2 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC11.75□□□□□ -0.53
LINC01558Q9Y6Z2 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC01558Q9Y6Z2 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC11.75□□□□□ -0.53
LINC01558Q9Y6Z2 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC01558Q9Y6Z2 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC11.75□□□□□ -0.53
LINC01558Q9Y6Z2 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC11.75□□□□□ -0.53
LINC01558Q9Y6Z2 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC11.75□□□□□ -0.53
LINC01558Q9Y6Z2 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC11.75□□□□□ -0.53
LINC01558Q9Y6Z2 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC11.75□□□□□ -0.53
LINC01558Q9Y6Z2 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC01558Q9Y6Z2 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC01558Q9Y6Z2 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC11.75□□□□□ -0.53
LINC01558Q9Y6Z2 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC01558Q9Y6Z2 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC11.75□□□□□ -0.53
LINC01558Q9Y6Z2 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC11.75□□□□□ -0.53
LINC01558Q9Y6Z2 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC11.75□□□□□ -0.53
LINC01558Q9Y6Z2 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC11.75□□□□□ -0.53
LINC01558Q9Y6Z2 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC01558Q9Y6Z2 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC11.74□□□□□ -0.53
LINC01558Q9Y6Z2 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC11.74□□□□□ -0.53
LINC01558Q9Y6Z2 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC11.74□□□□□ -0.53
LINC01558Q9Y6Z2 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
LINC01558Q9Y6Z2 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
LINC01558Q9Y6Z2 SLC6A10P-202ENST00000431994 2058 ntBASIC11.74□□□□□ -0.53
LINC01558Q9Y6Z2 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
LINC01558Q9Y6Z2 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC01558Q9Y6Z2 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
LINC01558Q9Y6Z2 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
LINC01558Q9Y6Z2 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC11.74□□□□□ -0.53
LINC01558Q9Y6Z2 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC01558Q9Y6Z2 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC01558Q9Y6Z2 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC11.74□□□□□ -0.53
LINC01558Q9Y6Z2 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC01558Q9Y6Z2 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC01558Q9Y6Z2 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC01558Q9Y6Z2 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC01558Q9Y6Z2 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
LINC01558Q9Y6Z2 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC01558Q9Y6Z2 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC01558Q9Y6Z2 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC01558Q9Y6Z2 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC01558Q9Y6Z2 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC01558Q9Y6Z2 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
LINC01558Q9Y6Z2 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC01558Q9Y6Z2 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
LINC01558Q9Y6Z2 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC11.74□□□□□ -0.53
LINC01558Q9Y6Z2 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
LINC01558Q9Y6Z2 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC01558Q9Y6Z2 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
LINC01558Q9Y6Z2 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC01558Q9Y6Z2 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC01558Q9Y6Z2 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC11.73□□□□□ -0.53
LINC01558Q9Y6Z2 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC01558Q9Y6Z2 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
LINC01558Q9Y6Z2 ESRRAP2-201ENST00000418437 1549 ntBASIC11.73□□□□□ -0.53
LINC01558Q9Y6Z2 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC11.73□□□□□ -0.53
LINC01558Q9Y6Z2 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
LINC01558Q9Y6Z2 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms