Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC25.87■■□□□ 1.73
PCDHA1Q9Y5I3 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC25.87■■□□□ 1.73
PCDHA1Q9Y5I3 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC25.87■■□□□ 1.73
PCDHA1Q9Y5I3 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC25.87■■□□□ 1.73
PCDHA1Q9Y5I3 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC25.87■■□□□ 1.73
PCDHA1Q9Y5I3 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC25.87■■□□□ 1.73
PCDHA1Q9Y5I3 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC25.87■■□□□ 1.73
PCDHA1Q9Y5I3 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC25.87■■□□□ 1.73
PCDHA1Q9Y5I3 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
PCDHA1Q9Y5I3 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC25.86■■□□□ 1.73
PCDHA1Q9Y5I3 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
PCDHA1Q9Y5I3 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
PCDHA1Q9Y5I3 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC25.86■■□□□ 1.73
PCDHA1Q9Y5I3 AL138724.1-201ENST00000606771 1088 ntBASIC25.86■■□□□ 1.73
PCDHA1Q9Y5I3 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC25.86■■□□□ 1.73
PCDHA1Q9Y5I3 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
PCDHA1Q9Y5I3 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
PCDHA1Q9Y5I3 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC25.85■■□□□ 1.73
PCDHA1Q9Y5I3 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
PCDHA1Q9Y5I3 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC25.85■■□□□ 1.73
PCDHA1Q9Y5I3 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC25.85■■□□□ 1.73
PCDHA1Q9Y5I3 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC25.85■■□□□ 1.73
PCDHA1Q9Y5I3 MIR3181-201ENST00000578512 73 ntBASIC25.85■■□□□ 1.73
PCDHA1Q9Y5I3 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC25.85■■□□□ 1.73
PCDHA1Q9Y5I3 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC25.85■■□□□ 1.73
PCDHA1Q9Y5I3 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
PCDHA1Q9Y5I3 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
PCDHA1Q9Y5I3 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
PCDHA1Q9Y5I3 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
PCDHA1Q9Y5I3 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
PCDHA1Q9Y5I3 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC25.84■■□□□ 1.73
PCDHA1Q9Y5I3 AL031432.3-201ENST00000607698 485 ntBASIC25.84■■□□□ 1.73
PCDHA1Q9Y5I3 AC011298.3-201ENST00000615796 283 ntBASIC25.84■■□□□ 1.73
PCDHA1Q9Y5I3 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC25.84■■□□□ 1.73
PCDHA1Q9Y5I3 GTSE1-AS1-202ENST00000623117 1518 ntBASIC25.83■■□□□ 1.73
PCDHA1Q9Y5I3 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
PCDHA1Q9Y5I3 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
PCDHA1Q9Y5I3 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
PCDHA1Q9Y5I3 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
PCDHA1Q9Y5I3 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.73
PCDHA1Q9Y5I3 EDA-201ENST00000338901 1233 ntBASIC25.83■■□□□ 1.73
PCDHA1Q9Y5I3 HES6-206ENST00000409574 738 ntTSL 2 BASIC25.83■■□□□ 1.73
PCDHA1Q9Y5I3 PTMA-205ENST00000410064 814 ntTSL 2 BASIC25.83■■□□□ 1.73
PCDHA1Q9Y5I3 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC25.83■■□□□ 1.73
PCDHA1Q9Y5I3 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC25.83■■□□□ 1.72
PCDHA1Q9Y5I3 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.72
PCDHA1Q9Y5I3 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC25.82■■□□□ 1.72
PCDHA1Q9Y5I3 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC25.82■■□□□ 1.72
PCDHA1Q9Y5I3 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC25.82■■□□□ 1.72
PCDHA1Q9Y5I3 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC25.82■■□□□ 1.72
PCDHA1Q9Y5I3 MIR4767-201ENST00000582827 78 ntBASIC25.82■■□□□ 1.72
PCDHA1Q9Y5I3 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC25.82■■□□□ 1.72
PCDHA1Q9Y5I3 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
PCDHA1Q9Y5I3 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
PCDHA1Q9Y5I3 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC25.81■■□□□ 1.72
PCDHA1Q9Y5I3 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC25.81■■□□□ 1.72
PCDHA1Q9Y5I3 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC25.81■■□□□ 1.72
PCDHA1Q9Y5I3 pRNA.6-201ENST00000610482 90 ntBASIC25.81■■□□□ 1.72
PCDHA1Q9Y5I3 pRNA.5-201ENST00000612139 90 ntBASIC25.81■■□□□ 1.72
PCDHA1Q9Y5I3 pRNA.11-201ENST00000618423 90 ntBASIC25.81■■□□□ 1.72
PCDHA1Q9Y5I3 pRNA.13-201ENST00000619112 90 ntBASIC25.81■■□□□ 1.72
PCDHA1Q9Y5I3 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC25.81■■□□□ 1.72
PCDHA1Q9Y5I3 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
PCDHA1Q9Y5I3 AC144652.1-201ENST00000609974 1624 ntBASIC25.81■■□□□ 1.72
PCDHA1Q9Y5I3 FP325331.1-202ENST00000623531 1380 ntBASIC25.81■■□□□ 1.72
PCDHA1Q9Y5I3 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC25.8■■□□□ 1.72
PCDHA1Q9Y5I3 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC25.8■■□□□ 1.72
PCDHA1Q9Y5I3 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
PCDHA1Q9Y5I3 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
PCDHA1Q9Y5I3 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC25.8■■□□□ 1.72
PCDHA1Q9Y5I3 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
PCDHA1Q9Y5I3 SUDS3P1-201ENST00000505831 966 ntBASIC25.8■■□□□ 1.72
PCDHA1Q9Y5I3 AL355001.2-201ENST00000620617 1191 ntBASIC25.8■■□□□ 1.72
PCDHA1Q9Y5I3 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC25.8■■□□□ 1.72
PCDHA1Q9Y5I3 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
PCDHA1Q9Y5I3 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC25.79■■□□□ 1.72
PCDHA1Q9Y5I3 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
PCDHA1Q9Y5I3 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
PCDHA1Q9Y5I3 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC25.79■■□□□ 1.72
PCDHA1Q9Y5I3 AC142381.2-201ENST00000566120 298 ntBASIC25.79■■□□□ 1.72
PCDHA1Q9Y5I3 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
PCDHA1Q9Y5I3 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC25.79■■□□□ 1.72
PCDHA1Q9Y5I3 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
PCDHA1Q9Y5I3 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
PCDHA1Q9Y5I3 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC25.78■■□□□ 1.72
PCDHA1Q9Y5I3 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
PCDHA1Q9Y5I3 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC25.78■■□□□ 1.72
PCDHA1Q9Y5I3 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
PCDHA1Q9Y5I3 GRAMD4P4-201ENST00000613563 1115 ntBASIC25.78■■□□□ 1.72
PCDHA1Q9Y5I3 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC25.78■■□□□ 1.72
PCDHA1Q9Y5I3 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
PCDHA1Q9Y5I3 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
PCDHA1Q9Y5I3 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
PCDHA1Q9Y5I3 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
PCDHA1Q9Y5I3 AC136469.2-201ENST00000623944 1028 ntBASIC25.77■■□□□ 1.72
PCDHA1Q9Y5I3 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC25.77■■□□□ 1.72
PCDHA1Q9Y5I3 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC25.77■■□□□ 1.72
PCDHA1Q9Y5I3 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
PCDHA1Q9Y5I3 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC25.76■■□□□ 1.72
PCDHA1Q9Y5I3 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC25.76■■□□□ 1.71
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms