Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC233723.2-201ENST00000623798 2106 ntBASIC18.17■□□□□ 0.5
FOXA2Q9Y261 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
FOXA2Q9Y261 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
FOXA2Q9Y261 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
FOXA2Q9Y261 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
FOXA2Q9Y261 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC18.16■□□□□ 0.5
FOXA2Q9Y261 AL035685.1-201ENST00000636663 812 ntBASIC18.16■□□□□ 0.5
FOXA2Q9Y261 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
FOXA2Q9Y261 AF131216.4-201ENST00000638924 1588 ntBASIC18.16■□□□□ 0.5
FOXA2Q9Y261 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
FOXA2Q9Y261 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
FOXA2Q9Y261 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXA2Q9Y261 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXA2Q9Y261 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
FOXA2Q9Y261 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
FOXA2Q9Y261 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXA2Q9Y261 LBH-205ENST00000407930 756 ntTSL 2 BASIC18.15■□□□□ 0.5
FOXA2Q9Y261 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC18.15■□□□□ 0.5
FOXA2Q9Y261 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
FOXA2Q9Y261 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXA2Q9Y261 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXA2Q9Y261 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC18.15■□□□□ 0.5
FOXA2Q9Y261 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXA2Q9Y261 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXA2Q9Y261 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
FOXA2Q9Y261 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXA2Q9Y261 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXA2Q9Y261 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
FOXA2Q9Y261 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
FOXA2Q9Y261 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
FOXA2Q9Y261 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
FOXA2Q9Y261 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.5
FOXA2Q9Y261 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.5
FOXA2Q9Y261 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
FOXA2Q9Y261 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
FOXA2Q9Y261 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
FOXA2Q9Y261 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
FOXA2Q9Y261 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC18.14■□□□□ 0.49
FOXA2Q9Y261 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC18.14■□□□□ 0.49
FOXA2Q9Y261 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
FOXA2Q9Y261 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC18.14■□□□□ 0.49
FOXA2Q9Y261 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
FOXA2Q9Y261 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
FOXA2Q9Y261 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC18.14■□□□□ 0.49
FOXA2Q9Y261 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
FOXA2Q9Y261 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
FOXA2Q9Y261 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
FOXA2Q9Y261 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
FOXA2Q9Y261 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
FOXA2Q9Y261 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC18.13■□□□□ 0.49
FOXA2Q9Y261 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC18.13■□□□□ 0.49
FOXA2Q9Y261 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC18.13■□□□□ 0.49
FOXA2Q9Y261 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC18.13■□□□□ 0.49
FOXA2Q9Y261 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
FOXA2Q9Y261 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
FOXA2Q9Y261 C1orf229-201ENST00000623686 2258 ntBASIC18.12■□□□□ 0.49
FOXA2Q9Y261 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
FOXA2Q9Y261 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
FOXA2Q9Y261 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
FOXA2Q9Y261 AC239859.2-201ENST00000444165 318 ntBASIC18.12■□□□□ 0.49
FOXA2Q9Y261 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
FOXA2Q9Y261 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC18.12■□□□□ 0.49
FOXA2Q9Y261 AC021242.3-201ENST00000607598 1377 ntBASIC18.12■□□□□ 0.49
FOXA2Q9Y261 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
FOXA2Q9Y261 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC18.12■□□□□ 0.49
FOXA2Q9Y261 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
FOXA2Q9Y261 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
FOXA2Q9Y261 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC18.12■□□□□ 0.49
FOXA2Q9Y261 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
FOXA2Q9Y261 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
FOXA2Q9Y261 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
FOXA2Q9Y261 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
FOXA2Q9Y261 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
FOXA2Q9Y261 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
FOXA2Q9Y261 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
FOXA2Q9Y261 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
FOXA2Q9Y261 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
FOXA2Q9Y261 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
FOXA2Q9Y261 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
FOXA2Q9Y261 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
FOXA2Q9Y261 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
FOXA2Q9Y261 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC18.1■□□□□ 0.49
FOXA2Q9Y261 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
FOXA2Q9Y261 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
FOXA2Q9Y261 TK2-202ENST00000417693 1046 ntTSL 2 BASIC18.1■□□□□ 0.49
FOXA2Q9Y261 LSM7-203ENST00000585409 512 ntTSL 2 BASIC18.1■□□□□ 0.49
FOXA2Q9Y261 TRIR-205ENST00000592273 783 ntTSL 3 BASIC18.1■□□□□ 0.49
FOXA2Q9Y261 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
FOXA2Q9Y261 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
FOXA2Q9Y261 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
FOXA2Q9Y261 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
FOXA2Q9Y261 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
FOXA2Q9Y261 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
FOXA2Q9Y261 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
FOXA2Q9Y261 HES6-204ENST00000409182 863 ntTSL 2 BASIC18.09■□□□□ 0.49
FOXA2Q9Y261 MIR4787-201ENST00000607364 84 ntBASIC18.09■□□□□ 0.49
FOXA2Q9Y261 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC18.09■□□□□ 0.49
FOXA2Q9Y261 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
FOXA2Q9Y261 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
FOXA2Q9Y261 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms