Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SSX3Q99909 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SSX3Q99909 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SSX3Q99909 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SSX3Q99909 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SSX3Q99909 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SSX3Q99909 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SSX3Q99909 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SSX3Q99909 LBH-205ENST00000407930 756 ntTSL 2 BASIC18.68■□□□□ 0.58
SSX3Q99909 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC18.68■□□□□ 0.58
SSX3Q99909 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC18.68■□□□□ 0.58
SSX3Q99909 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.68■□□□□ 0.58
SSX3Q99909 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SSX3Q99909 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SSX3Q99909 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SSX3Q99909 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SSX3Q99909 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSX3Q99909 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
SSX3Q99909 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SSX3Q99909 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
SSX3Q99909 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
SSX3Q99909 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSX3Q99909 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SSX3Q99909 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSX3Q99909 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
SSX3Q99909 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSX3Q99909 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSX3Q99909 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSX3Q99909 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC18.67■□□□□ 0.58
SSX3Q99909 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC18.67■□□□□ 0.58
SSX3Q99909 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
SSX3Q99909 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSX3Q99909 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SSX3Q99909 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
SSX3Q99909 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SSX3Q99909 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SSX3Q99909 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SSX3Q99909 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SSX3Q99909 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC18.66■□□□□ 0.58
SSX3Q99909 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC18.66■□□□□ 0.58
SSX3Q99909 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SSX3Q99909 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SSX3Q99909 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SSX3Q99909 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SSX3Q99909 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SSX3Q99909 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SSX3Q99909 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
SSX3Q99909 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SSX3Q99909 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC18.65■□□□□ 0.58
SSX3Q99909 LSM7-203ENST00000585409 512 ntTSL 2 BASIC18.65■□□□□ 0.58
SSX3Q99909 MIR6724-1-201ENST00000616420 92 ntBASIC18.65■□□□□ 0.58
SSX3Q99909 MIR6724-2-201ENST00000616483 92 ntBASIC18.65■□□□□ 0.58
SSX3Q99909 MIR6724-4-201ENST00000617390 92 ntBASIC18.65■□□□□ 0.58
SSX3Q99909 MIR6724-3-201ENST00000622482 92 ntBASIC18.65■□□□□ 0.58
SSX3Q99909 EXOG-217ENST00000630638 197 ntTSL 5 BASIC18.65■□□□□ 0.58
SSX3Q99909 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC18.65■□□□□ 0.58
SSX3Q99909 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SSX3Q99909 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC18.65■□□□□ 0.58
SSX3Q99909 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SSX3Q99909 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SSX3Q99909 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
SSX3Q99909 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
SSX3Q99909 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SSX3Q99909 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.57
SSX3Q99909 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SSX3Q99909 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SSX3Q99909 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC18.64■□□□□ 0.57
SSX3Q99909 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
SSX3Q99909 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SSX3Q99909 RNF165-205ENST00000588679 2904 ntBASIC18.64■□□□□ 0.57
SSX3Q99909 AC008406.3-201ENST00000620001 1374 ntBASIC18.64■□□□□ 0.57
SSX3Q99909 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
SSX3Q99909 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SSX3Q99909 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SSX3Q99909 LSM4-201ENST00000252816 986 ntTSL 2 BASIC18.63■□□□□ 0.57
SSX3Q99909 AL121603.2-201ENST00000557373 2117 ntBASIC18.63■□□□□ 0.57
SSX3Q99909 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC18.63■□□□□ 0.57
SSX3Q99909 SNX5-217ENST00000606557 1087 ntBASIC18.63■□□□□ 0.57
SSX3Q99909 MIR6089-201ENST00000616698 64 ntBASIC18.63■□□□□ 0.57
SSX3Q99909 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
SSX3Q99909 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
SSX3Q99909 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC18.63■□□□□ 0.57
SSX3Q99909 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SSX3Q99909 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
SSX3Q99909 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
SSX3Q99909 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SSX3Q99909 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC18.62■□□□□ 0.57
SSX3Q99909 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC18.62■□□□□ 0.57
SSX3Q99909 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
SSX3Q99909 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
SSX3Q99909 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
SSX3Q99909 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
SSX3Q99909 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC18.62■□□□□ 0.57
SSX3Q99909 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC18.62■□□□□ 0.57
SSX3Q99909 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC18.62■□□□□ 0.57
SSX3Q99909 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC18.62■□□□□ 0.57
SSX3Q99909 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC18.62■□□□□ 0.57
SSX3Q99909 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC18.62■□□□□ 0.57
SSX3Q99909 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
SSX3Q99909 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms