Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC21.53■■□□□ 1.04
CLIP3Q96DZ5 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
CLIP3Q96DZ5 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC21.53■■□□□ 1.04
CLIP3Q96DZ5 USF2-207ENST00000595068 1612 ntTSL 5 BASIC21.53■■□□□ 1.04
CLIP3Q96DZ5 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CLIP3Q96DZ5 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
CLIP3Q96DZ5 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
CLIP3Q96DZ5 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
CLIP3Q96DZ5 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
CLIP3Q96DZ5 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC21.52■■□□□ 1.04
CLIP3Q96DZ5 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
CLIP3Q96DZ5 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CLIP3Q96DZ5 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CLIP3Q96DZ5 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CLIP3Q96DZ5 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
CLIP3Q96DZ5 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
CLIP3Q96DZ5 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CLIP3Q96DZ5 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CLIP3Q96DZ5 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CLIP3Q96DZ5 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CLIP3Q96DZ5 EDA-201ENST00000338901 1233 ntBASIC21.51■■□□□ 1.03
CLIP3Q96DZ5 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC21.51■■□□□ 1.03
CLIP3Q96DZ5 AL355001.2-201ENST00000620617 1191 ntBASIC21.51■■□□□ 1.03
CLIP3Q96DZ5 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CLIP3Q96DZ5 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
CLIP3Q96DZ5 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
CLIP3Q96DZ5 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CLIP3Q96DZ5 C17orf82-201ENST00000623772 1530 ntBASIC21.5■■□□□ 1.03
CLIP3Q96DZ5 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CLIP3Q96DZ5 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC21.5■■□□□ 1.03
CLIP3Q96DZ5 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC21.5■■□□□ 1.03
CLIP3Q96DZ5 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC21.5■■□□□ 1.03
CLIP3Q96DZ5 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC21.5■■□□□ 1.03
CLIP3Q96DZ5 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CLIP3Q96DZ5 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CLIP3Q96DZ5 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC21.5■■□□□ 1.03
CLIP3Q96DZ5 AC241377.3-202ENST00000626088 1088 ntBASIC21.5■■□□□ 1.03
CLIP3Q96DZ5 AC241585.3-202ENST00000628937 1088 ntBASIC21.5■■□□□ 1.03
CLIP3Q96DZ5 AC245100.8-202ENST00000629247 1058 ntBASIC21.5■■□□□ 1.03
CLIP3Q96DZ5 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
CLIP3Q96DZ5 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CLIP3Q96DZ5 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CLIP3Q96DZ5 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
CLIP3Q96DZ5 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
CLIP3Q96DZ5 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC21.49■■□□□ 1.03
CLIP3Q96DZ5 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLIP3Q96DZ5 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLIP3Q96DZ5 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLIP3Q96DZ5 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLIP3Q96DZ5 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC21.49■■□□□ 1.03
CLIP3Q96DZ5 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CLIP3Q96DZ5 EBPL-204ENST00000378272 766 ntTSL 3 BASIC21.49■■□□□ 1.03
CLIP3Q96DZ5 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC21.49■■□□□ 1.03
CLIP3Q96DZ5 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC21.49■■□□□ 1.03
CLIP3Q96DZ5 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC21.49■■□□□ 1.03
CLIP3Q96DZ5 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.49■■□□□ 1.03
CLIP3Q96DZ5 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CLIP3Q96DZ5 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.48■■□□□ 1.03
CLIP3Q96DZ5 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CLIP3Q96DZ5 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLIP3Q96DZ5 SERBP1P1-201ENST00000396021 1160 ntBASIC21.48■■□□□ 1.03
CLIP3Q96DZ5 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CLIP3Q96DZ5 LINC01124-201ENST00000409786 2117 ntBASIC21.48■■□□□ 1.03
CLIP3Q96DZ5 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CLIP3Q96DZ5 PTCHD3P2-201ENST00000424937 1205 ntBASIC21.48■■□□□ 1.03
CLIP3Q96DZ5 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLIP3Q96DZ5 GRAMD4P4-201ENST00000613563 1115 ntBASIC21.48■■□□□ 1.03
CLIP3Q96DZ5 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC21.48■■□□□ 1.03
CLIP3Q96DZ5 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLIP3Q96DZ5 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLIP3Q96DZ5 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLIP3Q96DZ5 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLIP3Q96DZ5 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CLIP3Q96DZ5 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC21.47■■□□□ 1.03
CLIP3Q96DZ5 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CLIP3Q96DZ5 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CLIP3Q96DZ5 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CLIP3Q96DZ5 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
CLIP3Q96DZ5 PTMA-205ENST00000410064 814 ntTSL 2 BASIC21.47■■□□□ 1.03
CLIP3Q96DZ5 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
CLIP3Q96DZ5 SUDS3P1-201ENST00000505831 966 ntBASIC21.47■■□□□ 1.03
CLIP3Q96DZ5 AL031432.3-201ENST00000607698 485 ntBASIC21.47■■□□□ 1.03
CLIP3Q96DZ5 NKILA-201ENST00000613231 537 ntTSL 4 BASIC21.47■■□□□ 1.03
CLIP3Q96DZ5 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC21.47■■□□□ 1.03
CLIP3Q96DZ5 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
CLIP3Q96DZ5 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
CLIP3Q96DZ5 EI24-204ENST00000527235 1625 ntTSL 5 BASIC21.47■■□□□ 1.03
CLIP3Q96DZ5 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CLIP3Q96DZ5 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC21.47■■□□□ 1.03
CLIP3Q96DZ5 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CLIP3Q96DZ5 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CLIP3Q96DZ5 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CLIP3Q96DZ5 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CLIP3Q96DZ5 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CLIP3Q96DZ5 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CLIP3Q96DZ5 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
CLIP3Q96DZ5 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CLIP3Q96DZ5 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC21.46■■□□□ 1.03
CLIP3Q96DZ5 GUK1-205ENST00000366722 850 ntTSL 3 BASIC21.45■■□□□ 1.02
CLIP3Q96DZ5 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC21.45■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 112.2 ms