Protein–RNA interactions for Protein: Q96DC8

ECHDC3, Enoyl-CoA hydratase domain-containing protein 3, mitochondrial, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3Q96DC8 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
ECHDC3Q96DC8 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC22.59■■□□□ 1.21
ECHDC3Q96DC8 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
ECHDC3Q96DC8 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
ECHDC3Q96DC8 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC22.59■■□□□ 1.21
ECHDC3Q96DC8 AC096631.2-201ENST00000436136 790 ntBASIC22.59■■□□□ 1.21
ECHDC3Q96DC8 DUX4L19-201ENST00000557448 1267 ntBASIC22.59■■□□□ 1.21
ECHDC3Q96DC8 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC22.59■■□□□ 1.21
ECHDC3Q96DC8 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
ECHDC3Q96DC8 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
ECHDC3Q96DC8 AC144652.1-201ENST00000609974 1624 ntBASIC22.59■■□□□ 1.21
ECHDC3Q96DC8 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
ECHDC3Q96DC8 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC22.59■■□□□ 1.21
ECHDC3Q96DC8 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC22.58■■□□□ 1.21
ECHDC3Q96DC8 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
ECHDC3Q96DC8 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
ECHDC3Q96DC8 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC22.58■■□□□ 1.21
ECHDC3Q96DC8 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC22.58■■□□□ 1.21
ECHDC3Q96DC8 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
ECHDC3Q96DC8 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC22.58■■□□□ 1.21
ECHDC3Q96DC8 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
ECHDC3Q96DC8 FP325331.1-202ENST00000623531 1380 ntBASIC22.58■■□□□ 1.21
ECHDC3Q96DC8 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
ECHDC3Q96DC8 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC22.57■■□□□ 1.2
ECHDC3Q96DC8 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
ECHDC3Q96DC8 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
ECHDC3Q96DC8 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
ECHDC3Q96DC8 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
ECHDC3Q96DC8 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
ECHDC3Q96DC8 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
ECHDC3Q96DC8 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
ECHDC3Q96DC8 MTURN-203ENST00000409688 843 ntTSL 2 BASIC22.57■■□□□ 1.2
ECHDC3Q96DC8 NALT1-201ENST00000429224 738 ntTSL 5 BASIC22.57■■□□□ 1.2
ECHDC3Q96DC8 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC22.57■■□□□ 1.2
ECHDC3Q96DC8 AL139246.5-201ENST00000606645 996 ntBASIC22.57■■□□□ 1.2
ECHDC3Q96DC8 SF1-220ENST00000626028 704 ntTSL 2 BASIC22.57■■□□□ 1.2
ECHDC3Q96DC8 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
ECHDC3Q96DC8 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
ECHDC3Q96DC8 H19-210ENST00000439725 1929 ntTSL 2 BASIC22.57■■□□□ 1.2
ECHDC3Q96DC8 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC22.57■■□□□ 1.2
ECHDC3Q96DC8 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC22.56■■□□□ 1.2
ECHDC3Q96DC8 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
ECHDC3Q96DC8 AC006455.2-201ENST00000429931 906 ntBASIC22.56■■□□□ 1.2
ECHDC3Q96DC8 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC22.56■■□□□ 1.2
ECHDC3Q96DC8 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC22.55■■□□□ 1.2
ECHDC3Q96DC8 AC079630.1-202ENST00000618127 1840 ntBASIC22.55■■□□□ 1.2
ECHDC3Q96DC8 UNC93B3-201ENST00000308076 687 ntBASIC22.55■■□□□ 1.2
ECHDC3Q96DC8 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
ECHDC3Q96DC8 AC009086.3-201ENST00000623486 1008 ntBASIC22.55■■□□□ 1.2
ECHDC3Q96DC8 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC22.55■■□□□ 1.2
ECHDC3Q96DC8 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
ECHDC3Q96DC8 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
ECHDC3Q96DC8 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC22.55■■□□□ 1.2
ECHDC3Q96DC8 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
ECHDC3Q96DC8 SYT6-210ENST00000641643 1587 ntBASIC22.55■■□□□ 1.2
ECHDC3Q96DC8 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
ECHDC3Q96DC8 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
ECHDC3Q96DC8 GTSE1-AS1-202ENST00000623117 1518 ntBASIC22.54■■□□□ 1.2
ECHDC3Q96DC8 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC22.54■■□□□ 1.2
ECHDC3Q96DC8 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
ECHDC3Q96DC8 DUX4L4-201ENST00000566884 1269 ntBASIC22.54■■□□□ 1.2
ECHDC3Q96DC8 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC22.54■■□□□ 1.2
ECHDC3Q96DC8 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
ECHDC3Q96DC8 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
ECHDC3Q96DC8 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC22.54■■□□□ 1.2
ECHDC3Q96DC8 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
ECHDC3Q96DC8 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
ECHDC3Q96DC8 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
ECHDC3Q96DC8 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
ECHDC3Q96DC8 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
ECHDC3Q96DC8 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
ECHDC3Q96DC8 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
ECHDC3Q96DC8 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
ECHDC3Q96DC8 SERBP1P1-201ENST00000396021 1160 ntBASIC22.53■■□□□ 1.2
ECHDC3Q96DC8 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
ECHDC3Q96DC8 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
ECHDC3Q96DC8 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC22.53■■□□□ 1.2
ECHDC3Q96DC8 AL138724.1-201ENST00000606771 1088 ntBASIC22.53■■□□□ 1.2
ECHDC3Q96DC8 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
ECHDC3Q96DC8 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
ECHDC3Q96DC8 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC22.53■■□□□ 1.2
ECHDC3Q96DC8 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC22.53■■□□□ 1.2
ECHDC3Q96DC8 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
ECHDC3Q96DC8 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
ECHDC3Q96DC8 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC22.52■■□□□ 1.2
ECHDC3Q96DC8 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC22.52■■□□□ 1.2
ECHDC3Q96DC8 PTCHD3P2-201ENST00000424937 1205 ntBASIC22.52■■□□□ 1.2
ECHDC3Q96DC8 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
ECHDC3Q96DC8 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC22.52■■□□□ 1.2
ECHDC3Q96DC8 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC22.52■■□□□ 1.2
ECHDC3Q96DC8 LINC01529-204ENST00000636474 1715 ntBASIC22.51■■□□□ 1.19
ECHDC3Q96DC8 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC22.51■■□□□ 1.19
ECHDC3Q96DC8 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
ECHDC3Q96DC8 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
ECHDC3Q96DC8 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC22.51■■□□□ 1.19
ECHDC3Q96DC8 AL136162.1-201ENST00000607711 1078 ntBASIC22.51■■□□□ 1.19
ECHDC3Q96DC8 AC106739.1-201ENST00000617035 715 ntBASIC22.51■■□□□ 1.19
ECHDC3Q96DC8 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
ECHDC3Q96DC8 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
ECHDC3Q96DC8 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 13.2 ms