Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC23.05■■□□□ 1.28
SHROOM3Q8TF72 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC23.05■■□□□ 1.28
SHROOM3Q8TF72 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
SHROOM3Q8TF72 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
SHROOM3Q8TF72 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
SHROOM3Q8TF72 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
SHROOM3Q8TF72 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SHROOM3Q8TF72 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
SHROOM3Q8TF72 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SHROOM3Q8TF72 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
SHROOM3Q8TF72 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
SHROOM3Q8TF72 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
SHROOM3Q8TF72 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SHROOM3Q8TF72 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SHROOM3Q8TF72 AL117332.1-201ENST00000622628 974 ntBASIC23.03■■□□□ 1.28
SHROOM3Q8TF72 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SHROOM3Q8TF72 DUSP8P3-201ENST00000399571 1760 ntBASIC23.03■■□□□ 1.28
SHROOM3Q8TF72 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SHROOM3Q8TF72 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SHROOM3Q8TF72 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SHROOM3Q8TF72 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC23.03■■□□□ 1.28
SHROOM3Q8TF72 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SHROOM3Q8TF72 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC23.02■■□□□ 1.28
SHROOM3Q8TF72 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SHROOM3Q8TF72 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
SHROOM3Q8TF72 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
SHROOM3Q8TF72 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
SHROOM3Q8TF72 AK3-203ENST00000447596 705 ntTSL 2 BASIC23.02■■□□□ 1.28
SHROOM3Q8TF72 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC23.02■■□□□ 1.28
SHROOM3Q8TF72 AL512631.2-201ENST00000604634 923 ntBASIC23.02■■□□□ 1.28
SHROOM3Q8TF72 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
SHROOM3Q8TF72 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC23.02■■□□□ 1.27
SHROOM3Q8TF72 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SHROOM3Q8TF72 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
SHROOM3Q8TF72 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
SHROOM3Q8TF72 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
SHROOM3Q8TF72 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC23.01■■□□□ 1.27
SHROOM3Q8TF72 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC23.01■■□□□ 1.27
SHROOM3Q8TF72 SRR-208ENST00000576848 588 ntTSL 4 BASIC23.01■■□□□ 1.27
SHROOM3Q8TF72 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC23.01■■□□□ 1.27
SHROOM3Q8TF72 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
SHROOM3Q8TF72 ME2-208ENST00000638937 2471 ntTSL 5 BASIC23.01■■□□□ 1.27
SHROOM3Q8TF72 C17orf82-201ENST00000623772 1530 ntBASIC23■■□□□ 1.27
SHROOM3Q8TF72 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
SHROOM3Q8TF72 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC23■■□□□ 1.27
SHROOM3Q8TF72 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
SHROOM3Q8TF72 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC23■■□□□ 1.27
SHROOM3Q8TF72 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC23■■□□□ 1.27
SHROOM3Q8TF72 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
SHROOM3Q8TF72 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC23■■□□□ 1.27
SHROOM3Q8TF72 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
SHROOM3Q8TF72 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
SHROOM3Q8TF72 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC23■■□□□ 1.27
SHROOM3Q8TF72 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
SHROOM3Q8TF72 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
SHROOM3Q8TF72 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC22.99■■□□□ 1.27
SHROOM3Q8TF72 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC22.99■■□□□ 1.27
SHROOM3Q8TF72 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
SHROOM3Q8TF72 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
SHROOM3Q8TF72 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
SHROOM3Q8TF72 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC22.99■■□□□ 1.27
SHROOM3Q8TF72 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC22.99■■□□□ 1.27
SHROOM3Q8TF72 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC22.99■■□□□ 1.27
SHROOM3Q8TF72 NALT1-201ENST00000429224 738 ntTSL 5 BASIC22.99■■□□□ 1.27
SHROOM3Q8TF72 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
SHROOM3Q8TF72 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC22.99■■□□□ 1.27
SHROOM3Q8TF72 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC22.99■■□□□ 1.27
SHROOM3Q8TF72 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC22.99■■□□□ 1.27
SHROOM3Q8TF72 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
SHROOM3Q8TF72 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
SHROOM3Q8TF72 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC22.98■■□□□ 1.27
SHROOM3Q8TF72 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
SHROOM3Q8TF72 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC22.98■■□□□ 1.27
SHROOM3Q8TF72 AL139246.5-201ENST00000606645 996 ntBASIC22.98■■□□□ 1.27
SHROOM3Q8TF72 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC22.98■■□□□ 1.27
SHROOM3Q8TF72 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC22.98■■□□□ 1.27
SHROOM3Q8TF72 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
SHROOM3Q8TF72 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
SHROOM3Q8TF72 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
SHROOM3Q8TF72 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC22.98■■□□□ 1.27
SHROOM3Q8TF72 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC22.98■■□□□ 1.27
SHROOM3Q8TF72 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC22.98■■□□□ 1.27
SHROOM3Q8TF72 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
SHROOM3Q8TF72 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC22.97■■□□□ 1.27
SHROOM3Q8TF72 AC144652.1-201ENST00000609974 1624 ntBASIC22.97■■□□□ 1.27
SHROOM3Q8TF72 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC22.97■■□□□ 1.27
SHROOM3Q8TF72 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC22.97■■□□□ 1.27
SHROOM3Q8TF72 RARRES2P6-201ENST00000567333 442 ntBASIC22.97■■□□□ 1.27
SHROOM3Q8TF72 AC110285.6-201ENST00000617652 491 ntBASIC22.97■■□□□ 1.27
SHROOM3Q8TF72 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC22.96■■□□□ 1.27
SHROOM3Q8TF72 RASSF1-AS1-201ENST00000629828 790 ntBASIC22.96■■□□□ 1.27
SHROOM3Q8TF72 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC22.96■■□□□ 1.27
SHROOM3Q8TF72 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
SHROOM3Q8TF72 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC22.96■■□□□ 1.27
SHROOM3Q8TF72 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC22.96■■□□□ 1.27
SHROOM3Q8TF72 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC22.96■■□□□ 1.27
SHROOM3Q8TF72 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC22.96■■□□□ 1.27
SHROOM3Q8TF72 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
SHROOM3Q8TF72 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC22.95■■□□□ 1.26
SHROOM3Q8TF72 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC22.95■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 23.3 ms