Protein–RNA interactions for Protein: Q8TD47

RPS4Y2, 40S ribosomal protein S4, Y isoform 2, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS4Y2Q8TD47 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RPS4Y2Q8TD47 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
RPS4Y2Q8TD47 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
RPS4Y2Q8TD47 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC19.73■□□□□ 0.75
RPS4Y2Q8TD47 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
RPS4Y2Q8TD47 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
RPS4Y2Q8TD47 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.72■□□□□ 0.75
RPS4Y2Q8TD47 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
RPS4Y2Q8TD47 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
RPS4Y2Q8TD47 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
RPS4Y2Q8TD47 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
RPS4Y2Q8TD47 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
RPS4Y2Q8TD47 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
RPS4Y2Q8TD47 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
RPS4Y2Q8TD47 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC19.72■□□□□ 0.75
RPS4Y2Q8TD47 U85056.1-201ENST00000616429 682 ntBASIC19.72■□□□□ 0.75
RPS4Y2Q8TD47 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
RPS4Y2Q8TD47 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
RPS4Y2Q8TD47 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RPS4Y2Q8TD47 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
RPS4Y2Q8TD47 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
RPS4Y2Q8TD47 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
RPS4Y2Q8TD47 LBH-205ENST00000407930 756 ntTSL 2 BASIC19.71■□□□□ 0.75
RPS4Y2Q8TD47 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC19.71■□□□□ 0.75
RPS4Y2Q8TD47 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
RPS4Y2Q8TD47 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RPS4Y2Q8TD47 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
RPS4Y2Q8TD47 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
RPS4Y2Q8TD47 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
RPS4Y2Q8TD47 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
RPS4Y2Q8TD47 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
RPS4Y2Q8TD47 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
RPS4Y2Q8TD47 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RPS4Y2Q8TD47 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RPS4Y2Q8TD47 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.7■□□□□ 0.74
RPS4Y2Q8TD47 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RPS4Y2Q8TD47 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
RPS4Y2Q8TD47 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.7■□□□□ 0.74
RPS4Y2Q8TD47 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
RPS4Y2Q8TD47 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
RPS4Y2Q8TD47 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
RPS4Y2Q8TD47 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
RPS4Y2Q8TD47 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
RPS4Y2Q8TD47 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
RPS4Y2Q8TD47 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC19.69■□□□□ 0.74
RPS4Y2Q8TD47 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
RPS4Y2Q8TD47 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
RPS4Y2Q8TD47 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
RPS4Y2Q8TD47 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
RPS4Y2Q8TD47 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
RPS4Y2Q8TD47 AC019171.1-201ENST00000601251 1056 ntBASIC19.69■□□□□ 0.74
RPS4Y2Q8TD47 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
RPS4Y2Q8TD47 GAK-223ENST00000628912 497 ntTSL 5 BASIC19.69■□□□□ 0.74
RPS4Y2Q8TD47 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC19.69■□□□□ 0.74
RPS4Y2Q8TD47 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
RPS4Y2Q8TD47 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC19.69■□□□□ 0.74
RPS4Y2Q8TD47 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
RPS4Y2Q8TD47 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
RPS4Y2Q8TD47 AC139530.1-201ENST00000575312 1977 ntBASIC19.68■□□□□ 0.74
RPS4Y2Q8TD47 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
RPS4Y2Q8TD47 AC022616.5-201ENST00000518796 181 ntBASIC19.68■□□□□ 0.74
RPS4Y2Q8TD47 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
RPS4Y2Q8TD47 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC19.68■□□□□ 0.74
RPS4Y2Q8TD47 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
RPS4Y2Q8TD47 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RPS4Y2Q8TD47 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC19.67■□□□□ 0.74
RPS4Y2Q8TD47 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
RPS4Y2Q8TD47 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC19.67■□□□□ 0.74
RPS4Y2Q8TD47 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
RPS4Y2Q8TD47 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RPS4Y2Q8TD47 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
RPS4Y2Q8TD47 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
RPS4Y2Q8TD47 AC012354.3-201ENST00000623734 483 ntBASIC19.67■□□□□ 0.74
RPS4Y2Q8TD47 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
RPS4Y2Q8TD47 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
RPS4Y2Q8TD47 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
RPS4Y2Q8TD47 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
RPS4Y2Q8TD47 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC19.66■□□□□ 0.74
RPS4Y2Q8TD47 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RPS4Y2Q8TD47 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
RPS4Y2Q8TD47 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RPS4Y2Q8TD47 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
RPS4Y2Q8TD47 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC19.66■□□□□ 0.74
RPS4Y2Q8TD47 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
RPS4Y2Q8TD47 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC19.66■□□□□ 0.74
RPS4Y2Q8TD47 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
RPS4Y2Q8TD47 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19.66■□□□□ 0.74
RPS4Y2Q8TD47 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
RPS4Y2Q8TD47 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
RPS4Y2Q8TD47 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC19.66■□□□□ 0.74
RPS4Y2Q8TD47 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC19.66■□□□□ 0.74
RPS4Y2Q8TD47 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RPS4Y2Q8TD47 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
RPS4Y2Q8TD47 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC19.65■□□□□ 0.74
RPS4Y2Q8TD47 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC19.65■□□□□ 0.74
RPS4Y2Q8TD47 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC19.65■□□□□ 0.74
RPS4Y2Q8TD47 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RPS4Y2Q8TD47 AC129492.7-201ENST00000622992 756 ntBASIC19.65■□□□□ 0.74
RPS4Y2Q8TD47 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
RPS4Y2Q8TD47 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms