Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 RHOC-215ENST00000484054 521 ntTSL 516.43■□□□□ 0.221e-6■■■■□ 19.7
DDX55Q8NHQ9 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC16.11■□□□□ 0.172e-11■■■■□ 19.7
DDX55Q8NHQ9 HNF1A-207ENST00000540108 3039 ntTSL 1 (best)16.1■□□□□ 0.172e-11■■■■□ 19.7
DDX55Q8NHQ9 HNF1A-214ENST00000560968 3030 ntTSL 1 (best)16.04■□□□□ 0.162e-11■■■■□ 19.7
DDX55Q8NHQ9 RHOC-209ENST00000414971 470 ntTSL 315.65■□□□□ 0.12e-6■■■■□ 19.7
DDX55Q8NHQ9 AL603832.3-202ENST00000607158 807 ntTSL 515.18■□□□□ 0.028e-7■■■■□ 19.7
DDX55Q8NHQ9 HNF1A-201ENST00000257555 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.072e-11■■■■□ 19.7
DDX55Q8NHQ9 HNF1A-208ENST00000541395 3332 ntTSL 2 BASIC14.35□□□□□ -0.112e-11■■■■□ 19.7
DDX55Q8NHQ9 AL603832.3-203ENST00000606505 813 ntAPPRIS P5 TSL 5 BASIC14.24□□□□□ -0.138e-7■■■■□ 19.7
DDX55Q8NHQ9 AL603832.3-204ENST00000605933 744 ntAPPRIS ALT2 TSL 514.24□□□□□ -0.138e-7■■■■□ 19.7
DDX55Q8NHQ9 NDUFA10-201ENST00000252711 4915 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.142e-11■■■■□ 19.7
DDX55Q8NHQ9 AL603832.3-201ENST00000471038 792 ntTSL 213.49□□□□□ -0.258e-7■■■■□ 19.7
DDX55Q8NHQ9 NDUFA10-212ENST00000485344 4509 ntTSL 213.32□□□□□ -0.282e-11■■■■□ 19.7
DDX55Q8NHQ9 RHOC-211ENST00000436685 517 ntTSL 512.77□□□□□ -0.378e-7■■■■□ 19.7
DDX55Q8NHQ9 NDUFA10-206ENST00000419408 662 ntTSL 512.02□□□□□ -0.492e-11■■■■□ 19.7
DDX55Q8NHQ9 NDUFA10-210ENST00000471378 582 ntTSL 311.86□□□□□ -0.512e-11■■■■□ 19.7
DDX55Q8NHQ9 NDUFA10-211ENST00000476216 817 ntTSL 211.86□□□□□ -0.512e-11■■■■□ 19.7
DDX55Q8NHQ9 MIIP-205ENST00000478749 779 ntTSL 218.6■□□□□ 0.575e-8■■■■□ 19.7
DDX55Q8NHQ9 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC24.64■■□□□ 1.532e-25■■■■□ 19.7
DDX55Q8NHQ9 CREB1-204ENST00000421139 713 ntTSL 521.33■■□□□ 1.012e-25■■■■□ 19.7
DDX55Q8NHQ9 CREB1-206ENST00000432329 7650 ntTSL 1 (best) BASIC11.17□□□□□ -0.622e-25■■■■□ 19.7
DDX55Q8NHQ9 CREB1-201ENST00000353267 7588 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.862e-25■■■■□ 19.7
DDX55Q8NHQ9 CREB1-216ENST00000494094 580 ntTSL 28.01□□□□□ -1.132e-25■■■■□ 19.7
DDX55Q8NHQ9 CREB1-211ENST00000452474 518 ntTSL 48.01□□□□□ -1.132e-25■■■■□ 19.7
DDX55Q8NHQ9 CREB1-207ENST00000445803 651 ntTSL 43.56□□□□□ -1.842e-25■■■■□ 19.7
DDX55Q8NHQ9 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC24.62■■□□□ 1.532e-7■■■■□ 19.6
DDX55Q8NHQ9 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.642e-7■■■■□ 19.6
DDX55Q8NHQ9 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC16.88■□□□□ 0.292e-7■■■■□ 19.6
DDX55Q8NHQ9 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC16■□□□□ 0.152e-7■■■■□ 19.6
DDX55Q8NHQ9 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC15.93■□□□□ 0.142e-7■■■■□ 19.6
DDX55Q8NHQ9 RPAP1-208ENST00000565167 1712 ntTSL 1 (best)16.39■□□□□ 0.212e-6■■■■□ 19.6
DDX55Q8NHQ9 RPAP1-201ENST00000304330 4665 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.382e-6■■■■□ 19.6
DDX55Q8NHQ9 RPAP1-204ENST00000562303 5897 ntTSL 1 (best)12.36□□□□□ -0.432e-6■■■■□ 19.6
DDX55Q8NHQ9 RPAP1-202ENST00000561603 3906 ntTSL 5 BASIC9.63□□□□□ -0.872e-6■■■■□ 19.6
DDX55Q8NHQ9 PPP1R8-203ENST00000373931 2651 ntTSL 1 (best) BASIC15.02□□□□□ -0.015e-13■■■■□ 19.6
DDX55Q8NHQ9 PPP1R8-202ENST00000311772 2344 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.035e-13■■■■□ 19.6
DDX55Q8NHQ9 PPP1R8-201ENST00000236412 2414 ntTSL 1 (best) BASIC14.82□□□□□ -0.045e-13■■■■□ 19.6
DDX55Q8NHQ9 PPP1R8-205ENST00000486634 459 ntTSL 37.27□□□□□ -1.255e-13■■■■□ 19.6
DDX55Q8NHQ9 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.815e-13■■■■□ 19.6
DDX55Q8NHQ9 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC17.31■□□□□ 0.365e-13■■■■□ 19.6
DDX55Q8NHQ9 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC16.61■□□□□ 0.255e-13■■■■□ 19.6
DDX55Q8NHQ9 ANXA5-203ENST00000506395 1606 ntTSL 514.01□□□□□ -0.175e-13■■■■□ 19.6
DDX55Q8NHQ9 ARHGEF11-202ENST00000368194 6889 ntAPPRIS P4 TSL 1 (best) BASIC11.11□□□□□ -0.631e-6■■■■□ 19.6
DDX55Q8NHQ9 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.774e-7■■■■□ 19.6
DDX55Q8NHQ9 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC33.06■■■□□ 2.888e-11■■■■□ 19.6
DDX55Q8NHQ9 GRK2-207ENST00000529738 500 ntTSL 225.59■■□□□ 1.698e-11■■■■□ 19.6
DDX55Q8NHQ9 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.848e-11■■■■□ 19.6
DDX55Q8NHQ9 GRK2-202ENST00000416281 4493 ntTSL 214.8□□□□□ -0.048e-11■■■■□ 19.6
DDX55Q8NHQ9 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC6.14□□□□□ -1.437e-9■■■■□ 19.6
DDX55Q8NHQ9 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.766e-7■■■■□ 19.6
DDX55Q8NHQ9 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC18.46■□□□□ 0.553e-8■■■■□ 19.5
DDX55Q8NHQ9 GOLGA2-214ENST00000611957 4259 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.523e-8■■■■□ 19.5
DDX55Q8NHQ9 GOLGA2-201ENST00000421699 4260 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.543e-8■■■■□ 19.5
DDX55Q8NHQ9 MYO18A-224ENST00000636100 1564 ntTSL 531.18■■■□□ 2.581e-14■■■■□ 19.5
DDX55Q8NHQ9 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.641e-14■■■■□ 19.5
DDX55Q8NHQ9 ATP1B3-209ENST00000487199 421 ntTSL 33.84□□□□□ -1.791e-14■■■■□ 19.5
DDX55Q8NHQ9 COX5B-204ENST00000494306 738 ntTSL 215.46■□□□□ 0.072e-20■■■■□ 19.5
DDX55Q8NHQ9 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC28.66■■■□□ 2.181e-7■■■■□ 19.5
DDX55Q8NHQ9 PHYKPL-204ENST00000474052 1539 ntTSL 1 (best)28.38■■■□□ 2.131e-7■■■■□ 19.5
DDX55Q8NHQ9 FBXW5-206ENST00000483559 2392 ntTSL 228.22■■■□□ 2.111e-7■■■■□ 19.5
DDX55Q8NHQ9 PHYKPL-211ENST00000494126 2297 ntTSL 1 (best)27.57■■■□□ 21e-7■■■■□ 19.5
DDX55Q8NHQ9 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC27.46■■□□□ 1.991e-7■■■■□ 19.5
DDX55Q8NHQ9 STX10-208ENST00000591197 907 ntTSL 327.35■■□□□ 1.971e-7■■■■□ 19.5
DDX55Q8NHQ9 FBXW5-204ENST00000459905 2339 ntTSL 227.06■■□□□ 1.921e-7■■■■□ 19.5
DDX55Q8NHQ9 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.841e-7■■■■□ 19.5
DDX55Q8NHQ9 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC25.79■■□□□ 1.721e-7■■■■□ 19.5
DDX55Q8NHQ9 STX10-206ENST00000588848 1164 ntTSL 225.09■■□□□ 1.611e-7■■■■□ 19.5
DDX55Q8NHQ9 STX10-203ENST00000440593 940 ntTSL 524.04■■□□□ 1.441e-7■■■■□ 19.5
DDX55Q8NHQ9 FBXW5-207ENST00000487794 1932 ntTSL 1 (best)23.16■■□□□ 1.31e-7■■■■□ 19.5
DDX55Q8NHQ9 PHYKPL-209ENST00000489262 2780 ntTSL 222.12■■□□□ 1.131e-7■■■■□ 19.5
DDX55Q8NHQ9 STX10-210ENST00000591843 1073 ntTSL 521.96■■□□□ 1.111e-7■■■■□ 19.5
DDX55Q8NHQ9 PHYKPL-210ENST00000493197 1969 ntTSL 221.94■■□□□ 1.11e-7■■■■□ 19.5
DDX55Q8NHQ9 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.031e-7■■■■□ 19.5
DDX55Q8NHQ9 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC21.17■□□□□ 0.981e-7■■■■□ 19.5
DDX55Q8NHQ9 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.91e-7■■■■□ 19.5
DDX55Q8NHQ9 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC20.15■□□□□ 0.821e-7■■■■□ 19.5
DDX55Q8NHQ9 TRAPPC11-204ENST00000505676 2244 ntTSL 1 (best)18.99■□□□□ 0.631e-7■■■■□ 19.5
DDX55Q8NHQ9 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.561e-7■■■■□ 19.5
DDX55Q8NHQ9 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.421e-7■■■■□ 19.5
DDX55Q8NHQ9 THAP7-207ENST00000488975 507 ntTSL 517.61■□□□□ 0.411e-7■■■■□ 19.5
DDX55Q8NHQ9 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.361e-7■■■■□ 19.5
DDX55Q8NHQ9 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC17.11■□□□□ 0.331e-7■■■■□ 19.5
DDX55Q8NHQ9 SARS2-202ENST00000430193 1886 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.291e-7■■■■□ 19.5
DDX55Q8NHQ9 SARS2-206ENST00000594259 690 ntTSL 216.8■□□□□ 0.281e-7■■■■□ 19.5
DDX55Q8NHQ9 PHYKPL-203ENST00000393488 1001 ntTSL 316.74■□□□□ 0.271e-7■■■■□ 19.5
DDX55Q8NHQ9 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.251e-7■■■■□ 19.5
DDX55Q8NHQ9 SARS2-205ENST00000594171 1631 ntTSL 2 BASIC15.37■□□□□ 0.051e-7■■■■□ 19.5
DDX55Q8NHQ9 MXD4-203ENST00000513372 4228 ntTSL 215.09■□□□□ 0.011e-7■■■■□ 19.5
DDX55Q8NHQ9 SARS2-211ENST00000598831 665 ntTSL 5 BASIC15.07■□□□□ 01e-7■■■■□ 19.5
DDX55Q8NHQ9 PHYKPL-207ENST00000481436 2025 ntTSL 214.65□□□□□ -0.061e-7■■■■□ 19.5
DDX55Q8NHQ9 PHYKPL-216ENST00000510991 814 ntTSL 314.12□□□□□ -0.151e-7■■■■□ 19.5
DDX55Q8NHQ9 PHYKPL-208ENST00000481811 2709 ntTSL 213.4□□□□□ -0.271e-7■■■■□ 19.5
DDX55Q8NHQ9 TRIAP1-201ENST00000302432 1153 ntTSL 213.15□□□□□ -0.31e-7■■■■□ 19.5
DDX55Q8NHQ9 FOXO4-202ENST00000374259 3301 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.371e-7■■■■□ 19.5
DDX55Q8NHQ9 TRAPPC11-208ENST00000511955 2342 ntTSL 25.24□□□□□ -1.571e-7■■■■□ 19.5
DDX55Q8NHQ9 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.057e-7■■■■□ 19.5
DDX55Q8NHQ9 POMGNT1-205ENST00000475642 407 ntTSL 317.5■□□□□ 0.397e-7■■■■□ 19.5
DDX55Q8NHQ9 POMGNT1-202ENST00000371992 2934 ntTSL 2 BASIC12.91□□□□□ -0.347e-7■■■■□ 19.5
DDX55Q8NHQ9 POMGNT1-203ENST00000396420 3480 ntTSL 2 BASIC11.67□□□□□ -0.547e-7■■■■□ 19.5
DDX55Q8NHQ9 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.56■□□□□ 0.882e-6■■■■□ 19.5
Retrieved 100 of 15,504 protein–RNA pairs in 144.5 ms