Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC116Q8IYX3 ME2-208ENST00000638937 2471 ntTSL 5 BASIC21.19■□□□□ 0.98
CCDC116Q8IYX3 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CCDC116Q8IYX3 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC116Q8IYX3 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC116Q8IYX3 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC116Q8IYX3 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC116Q8IYX3 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC116Q8IYX3 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC116Q8IYX3 EXOG-217ENST00000630638 197 ntTSL 5 BASIC21.18■□□□□ 0.98
CCDC116Q8IYX3 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC116Q8IYX3 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC116Q8IYX3 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC116Q8IYX3 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC116Q8IYX3 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC116Q8IYX3 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
CCDC116Q8IYX3 LTK-203ENST00000453182 2412 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC116Q8IYX3 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.17■□□□□ 0.98
CCDC116Q8IYX3 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC116Q8IYX3 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC116Q8IYX3 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC116Q8IYX3 AC079630.1-202ENST00000618127 1840 ntBASIC21.17■□□□□ 0.98
CCDC116Q8IYX3 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC21.17■□□□□ 0.98
CCDC116Q8IYX3 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.17■□□□□ 0.98
CCDC116Q8IYX3 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC21.17■□□□□ 0.98
CCDC116Q8IYX3 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.16■□□□□ 0.98
CCDC116Q8IYX3 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC116Q8IYX3 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.16■□□□□ 0.98
CCDC116Q8IYX3 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC116Q8IYX3 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC116Q8IYX3 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC116Q8IYX3 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
CCDC116Q8IYX3 CD72-202ENST00000378430 585 ntTSL 3 BASIC21.16■□□□□ 0.98
CCDC116Q8IYX3 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC116Q8IYX3 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC116Q8IYX3 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC116Q8IYX3 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC116Q8IYX3 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC116Q8IYX3 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
CCDC116Q8IYX3 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC21.15■□□□□ 0.98
CCDC116Q8IYX3 LSM4-201ENST00000252816 986 ntTSL 2 BASIC21.15■□□□□ 0.98
CCDC116Q8IYX3 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC21.15■□□□□ 0.98
CCDC116Q8IYX3 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC116Q8IYX3 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC116Q8IYX3 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC116Q8IYX3 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC21.14■□□□□ 0.98
CCDC116Q8IYX3 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC21.14■□□□□ 0.97
CCDC116Q8IYX3 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC21.14■□□□□ 0.97
CCDC116Q8IYX3 TRIR-205ENST00000592273 783 ntTSL 3 BASIC21.14■□□□□ 0.97
CCDC116Q8IYX3 DUSP8P3-201ENST00000399571 1760 ntBASIC21.14■□□□□ 0.97
CCDC116Q8IYX3 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
CCDC116Q8IYX3 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC116Q8IYX3 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC116Q8IYX3 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC21.14■□□□□ 0.97
CCDC116Q8IYX3 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC116Q8IYX3 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC116Q8IYX3 TFPT-201ENST00000391757 774 ntTSL 5 BASIC21.13■□□□□ 0.97
CCDC116Q8IYX3 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC116Q8IYX3 GUSBP5-201ENST00000418136 578 ntBASIC21.13■□□□□ 0.97
CCDC116Q8IYX3 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
CCDC116Q8IYX3 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC21.13■□□□□ 0.97
CCDC116Q8IYX3 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC21.13■□□□□ 0.97
CCDC116Q8IYX3 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC21.13■□□□□ 0.97
CCDC116Q8IYX3 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC21.13■□□□□ 0.97
CCDC116Q8IYX3 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
CCDC116Q8IYX3 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.13■□□□□ 0.97
CCDC116Q8IYX3 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC21.13■□□□□ 0.97
CCDC116Q8IYX3 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC116Q8IYX3 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC116Q8IYX3 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC116Q8IYX3 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC116Q8IYX3 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.12■□□□□ 0.97
CCDC116Q8IYX3 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC116Q8IYX3 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC116Q8IYX3 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC116Q8IYX3 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC21.12■□□□□ 0.97
CCDC116Q8IYX3 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
CCDC116Q8IYX3 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC116Q8IYX3 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC116Q8IYX3 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC116Q8IYX3 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC21.12■□□□□ 0.97
CCDC116Q8IYX3 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.12■□□□□ 0.97
CCDC116Q8IYX3 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC116Q8IYX3 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC116Q8IYX3 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC21.12■□□□□ 0.97
CCDC116Q8IYX3 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC116Q8IYX3 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC21.11■□□□□ 0.97
CCDC116Q8IYX3 KRT16P3-201ENST00000439127 1283 ntBASIC21.11■□□□□ 0.97
CCDC116Q8IYX3 AC133561.1-201ENST00000568600 2415 ntBASIC21.11■□□□□ 0.97
CCDC116Q8IYX3 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC116Q8IYX3 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC21.11■□□□□ 0.97
CCDC116Q8IYX3 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
CCDC116Q8IYX3 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
CCDC116Q8IYX3 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC116Q8IYX3 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
CCDC116Q8IYX3 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
CCDC116Q8IYX3 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC116Q8IYX3 MIR6724-1-201ENST00000616420 92 ntBASIC21.1■□□□□ 0.97
CCDC116Q8IYX3 MIR6724-2-201ENST00000616483 92 ntBASIC21.1■□□□□ 0.97
CCDC116Q8IYX3 MIR6724-4-201ENST00000617390 92 ntBASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms