Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
CCDC58Q4VC31 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20■□□□□ 0.79
CCDC58Q4VC31 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC58Q4VC31 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC58Q4VC31 ECEL1P1-201ENST00000373592 1742 ntBASIC19.99■□□□□ 0.79
CCDC58Q4VC31 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC58Q4VC31 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC58Q4VC31 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC58Q4VC31 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC58Q4VC31 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC58Q4VC31 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC58Q4VC31 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC58Q4VC31 FAM159A-204ENST00000517870 748 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC58Q4VC31 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.99■□□□□ 0.79
CCDC58Q4VC31 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC58Q4VC31 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC58Q4VC31 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC58Q4VC31 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC58Q4VC31 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
CCDC58Q4VC31 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC58Q4VC31 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC58Q4VC31 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC58Q4VC31 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC19.98■□□□□ 0.79
CCDC58Q4VC31 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC58Q4VC31 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.98■□□□□ 0.79
CCDC58Q4VC31 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC58Q4VC31 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC58Q4VC31 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC58Q4VC31 TMEM191C-206ENST00000432134 1129 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
CCDC58Q4VC31 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC58Q4VC31 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC58Q4VC31 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC58Q4VC31 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC58Q4VC31 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
CCDC58Q4VC31 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC58Q4VC31 H19-210ENST00000439725 1929 ntTSL 2 BASIC19.98■□□□□ 0.79
CCDC58Q4VC31 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC19.98■□□□□ 0.79
CCDC58Q4VC31 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC58Q4VC31 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC58Q4VC31 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC58Q4VC31 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC58Q4VC31 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC19.97■□□□□ 0.79
CCDC58Q4VC31 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC19.97■□□□□ 0.79
CCDC58Q4VC31 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC58Q4VC31 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC19.97■□□□□ 0.79
CCDC58Q4VC31 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
CCDC58Q4VC31 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC58Q4VC31 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC19.97■□□□□ 0.79
CCDC58Q4VC31 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC58Q4VC31 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC58Q4VC31 AC007375.3-201ENST00000600936 2314 ntBASIC19.97■□□□□ 0.79
CCDC58Q4VC31 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC58Q4VC31 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC58Q4VC31 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC58Q4VC31 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC19.96■□□□□ 0.79
CCDC58Q4VC31 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
CCDC58Q4VC31 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC58Q4VC31 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC58Q4VC31 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC58Q4VC31 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC19.96■□□□□ 0.79
CCDC58Q4VC31 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC19.96■□□□□ 0.79
CCDC58Q4VC31 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.96■□□□□ 0.79
CCDC58Q4VC31 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
CCDC58Q4VC31 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC58Q4VC31 IDNK-203ENST00000405990 629 ntTSL 2 BASIC19.96■□□□□ 0.79
CCDC58Q4VC31 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC19.96■□□□□ 0.79
CCDC58Q4VC31 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC19.96■□□□□ 0.79
CCDC58Q4VC31 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC58Q4VC31 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC58Q4VC31 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC58Q4VC31 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC58Q4VC31 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
CCDC58Q4VC31 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
CCDC58Q4VC31 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC19.96■□□□□ 0.79
CCDC58Q4VC31 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC58Q4VC31 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC58Q4VC31 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
CCDC58Q4VC31 EI24-204ENST00000527235 1625 ntTSL 5 BASIC19.95■□□□□ 0.78
CCDC58Q4VC31 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC58Q4VC31 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC58Q4VC31 GCA-201ENST00000233612 1694 ntTSL 2 BASIC19.95■□□□□ 0.78
CCDC58Q4VC31 ALDH1A3-203ENST00000557963 1670 ntBASIC19.95■□□□□ 0.78
CCDC58Q4VC31 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC19.95■□□□□ 0.78
CCDC58Q4VC31 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC58Q4VC31 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC58Q4VC31 PVT1-219ENST00000523427 938 ntTSL 3 BASIC19.95■□□□□ 0.78
CCDC58Q4VC31 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC19.95■□□□□ 0.78
CCDC58Q4VC31 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC58Q4VC31 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC58Q4VC31 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC19.95■□□□□ 0.78
CCDC58Q4VC31 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC58Q4VC31 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC58Q4VC31 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
CCDC58Q4VC31 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CCDC58Q4VC31 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
CCDC58Q4VC31 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC58Q4VC31 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC58Q4VC31 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC58Q4VC31 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
CCDC58Q4VC31 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms