Protein–RNA interactions for Protein: P61009

SPCS3, Signal peptidase complex subunit 3, humanhuman

Predictions only

Length 180 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPCS3P61009 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SPCS3P61009 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
SPCS3P61009 HYI-213ENST00000583037 1322 ntTSL 5 BASIC18.2■□□□□ 0.5
SPCS3P61009 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SPCS3P61009 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
SPCS3P61009 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SPCS3P61009 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC18.19■□□□□ 0.5
SPCS3P61009 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SPCS3P61009 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
SPCS3P61009 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
SPCS3P61009 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC18.19■□□□□ 0.5
SPCS3P61009 ALDH1A3-203ENST00000557963 1670 ntBASIC18.19■□□□□ 0.5
SPCS3P61009 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SPCS3P61009 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
SPCS3P61009 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC18.19■□□□□ 0.5
SPCS3P61009 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
SPCS3P61009 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SPCS3P61009 ABHD17AP3-201ENST00000503096 1137 ntBASIC18.19■□□□□ 0.5
SPCS3P61009 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
SPCS3P61009 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
SPCS3P61009 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SPCS3P61009 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SPCS3P61009 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC18.18■□□□□ 0.5
SPCS3P61009 EI24-204ENST00000527235 1625 ntTSL 5 BASIC18.18■□□□□ 0.5
SPCS3P61009 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC18.18■□□□□ 0.5
SPCS3P61009 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SPCS3P61009 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
SPCS3P61009 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SPCS3P61009 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
SPCS3P61009 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
SPCS3P61009 H19-210ENST00000439725 1929 ntTSL 2 BASIC18.17■□□□□ 0.5
SPCS3P61009 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC18.17■□□□□ 0.5
SPCS3P61009 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
SPCS3P61009 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
SPCS3P61009 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SPCS3P61009 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SPCS3P61009 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SPCS3P61009 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
SPCS3P61009 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
SPCS3P61009 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SPCS3P61009 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SPCS3P61009 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SPCS3P61009 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC18.16■□□□□ 0.5
SPCS3P61009 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SPCS3P61009 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC18.16■□□□□ 0.5
SPCS3P61009 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SPCS3P61009 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SPCS3P61009 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC18.16■□□□□ 0.5
SPCS3P61009 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SPCS3P61009 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SPCS3P61009 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SPCS3P61009 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SPCS3P61009 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SPCS3P61009 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SPCS3P61009 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
SPCS3P61009 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
SPCS3P61009 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
SPCS3P61009 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC18.15■□□□□ 0.5
SPCS3P61009 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SPCS3P61009 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SPCS3P61009 AC131274.2-201ENST00000580697 1507 ntBASIC18.15■□□□□ 0.5
SPCS3P61009 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
SPCS3P61009 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SPCS3P61009 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SPCS3P61009 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
SPCS3P61009 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC18.15■□□□□ 0.5
SPCS3P61009 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC18.15■□□□□ 0.5
SPCS3P61009 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SPCS3P61009 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.5
SPCS3P61009 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SPCS3P61009 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC18.14■□□□□ 0.49
SPCS3P61009 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC18.14■□□□□ 0.49
SPCS3P61009 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SPCS3P61009 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SPCS3P61009 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SPCS3P61009 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SPCS3P61009 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC18.14■□□□□ 0.49
SPCS3P61009 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
SPCS3P61009 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SPCS3P61009 EP400NL-214ENST00000641289 2402 ntBASIC18.14■□□□□ 0.49
SPCS3P61009 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SPCS3P61009 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SPCS3P61009 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC18.14■□□□□ 0.49
SPCS3P61009 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC18.14■□□□□ 0.49
SPCS3P61009 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SPCS3P61009 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
SPCS3P61009 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SPCS3P61009 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC18.14■□□□□ 0.49
SPCS3P61009 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SPCS3P61009 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SPCS3P61009 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SPCS3P61009 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SPCS3P61009 GUSBP5-202ENST00000510805 1989 ntBASIC18.13■□□□□ 0.49
SPCS3P61009 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SPCS3P61009 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SPCS3P61009 HYI-210ENST00000486909 905 ntTSL 5 BASIC18.13■□□□□ 0.49
SPCS3P61009 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC18.13■□□□□ 0.49
SPCS3P61009 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
SPCS3P61009 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SPCS3P61009 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms