Protein–RNA interactions for Protein: P49761

CLK3, Dual specificity protein kinase CLK3, humanhuman

Known RBP Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3P49761 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
CLK3P49761 LINC00565-201ENST00000562710 2331 ntBASIC21.19■□□□□ 0.98
CLK3P49761 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.19■□□□□ 0.98
CLK3P49761 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
CLK3P49761 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CLK3P49761 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CLK3P49761 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
CLK3P49761 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC21.18■□□□□ 0.98
CLK3P49761 AC009299.2-201ENST00000482477 511 ntBASIC21.18■□□□□ 0.98
CLK3P49761 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CLK3P49761 LSM7-203ENST00000585409 512 ntTSL 2 BASIC21.18■□□□□ 0.98
CLK3P49761 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
CLK3P49761 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CLK3P49761 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CLK3P49761 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CLK3P49761 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CLK3P49761 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC21.18■□□□□ 0.98
CLK3P49761 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CLK3P49761 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CLK3P49761 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLK3P49761 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLK3P49761 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
CLK3P49761 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CLK3P49761 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC21.17■□□□□ 0.98
CLK3P49761 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLK3P49761 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC21.17■□□□□ 0.98
CLK3P49761 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLK3P49761 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLK3P49761 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLK3P49761 AF131216.4-201ENST00000638924 1588 ntBASIC21.17■□□□□ 0.98
CLK3P49761 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC21.17■□□□□ 0.98
CLK3P49761 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.17■□□□□ 0.98
CLK3P49761 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLK3P49761 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLK3P49761 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
CLK3P49761 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLK3P49761 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.17■□□□□ 0.98
CLK3P49761 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CLK3P49761 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.16■□□□□ 0.98
CLK3P49761 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLK3P49761 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.16■□□□□ 0.98
CLK3P49761 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CLK3P49761 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC21.16■□□□□ 0.98
CLK3P49761 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.16■□□□□ 0.98
CLK3P49761 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLK3P49761 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLK3P49761 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CLK3P49761 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.15■□□□□ 0.98
CLK3P49761 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
CLK3P49761 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLK3P49761 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLK3P49761 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CLK3P49761 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CLK3P49761 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC21.15■□□□□ 0.98
CLK3P49761 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLK3P49761 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLK3P49761 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CLK3P49761 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CLK3P49761 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CLK3P49761 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CLK3P49761 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
CLK3P49761 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
CLK3P49761 AC021242.3-201ENST00000607598 1377 ntBASIC21.14■□□□□ 0.98
CLK3P49761 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CLK3P49761 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
CLK3P49761 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.14■□□□□ 0.97
CLK3P49761 AC239859.2-201ENST00000444165 318 ntBASIC21.14■□□□□ 0.97
CLK3P49761 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CLK3P49761 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC21.13■□□□□ 0.97
CLK3P49761 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLK3P49761 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
CLK3P49761 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
CLK3P49761 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLK3P49761 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC21.13■□□□□ 0.97
CLK3P49761 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CLK3P49761 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLK3P49761 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
CLK3P49761 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC21.13■□□□□ 0.97
CLK3P49761 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLK3P49761 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CLK3P49761 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
CLK3P49761 AL035685.1-201ENST00000636663 812 ntBASIC21.12■□□□□ 0.97
CLK3P49761 ANOS2P-203ENST00000472227 1816 ntBASIC21.12■□□□□ 0.97
CLK3P49761 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.12■□□□□ 0.97
CLK3P49761 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC21.12■□□□□ 0.97
CLK3P49761 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC21.12■□□□□ 0.97
CLK3P49761 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLK3P49761 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CLK3P49761 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLK3P49761 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
CLK3P49761 MIR4787-201ENST00000607364 84 ntBASIC21.11■□□□□ 0.97
CLK3P49761 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CLK3P49761 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
CLK3P49761 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CLK3P49761 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CLK3P49761 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CLK3P49761 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
CLK3P49761 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CLK3P49761 C1orf229-201ENST00000623686 2258 ntBASIC21.1■□□□□ 0.97
CLK3P49761 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms