Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
CIITAP33076 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
CIITAP33076 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
CIITAP33076 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
CIITAP33076 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC25.46■■□□□ 1.67
CIITAP33076 AC144652.1-201ENST00000609974 1624 ntBASIC25.46■■□□□ 1.67
CIITAP33076 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
CIITAP33076 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC25.46■■□□□ 1.67
CIITAP33076 DUX4L19-201ENST00000557448 1267 ntBASIC25.46■■□□□ 1.67
CIITAP33076 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC25.46■■□□□ 1.67
CIITAP33076 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC25.46■■□□□ 1.67
CIITAP33076 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
CIITAP33076 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC25.45■■□□□ 1.67
CIITAP33076 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
CIITAP33076 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
CIITAP33076 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
CIITAP33076 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
CIITAP33076 AC096631.2-201ENST00000436136 790 ntBASIC25.45■■□□□ 1.66
CIITAP33076 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC25.45■■□□□ 1.66
CIITAP33076 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC25.45■■□□□ 1.66
CIITAP33076 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC25.45■■□□□ 1.66
CIITAP33076 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
CIITAP33076 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC25.44■■□□□ 1.66
CIITAP33076 H19-210ENST00000439725 1929 ntTSL 2 BASIC25.44■■□□□ 1.66
CIITAP33076 NALT1-201ENST00000429224 738 ntTSL 5 BASIC25.44■■□□□ 1.66
CIITAP33076 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC25.44■■□□□ 1.66
CIITAP33076 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC25.44■■□□□ 1.66
CIITAP33076 AL139246.5-201ENST00000606645 996 ntBASIC25.44■■□□□ 1.66
CIITAP33076 SF1-220ENST00000626028 704 ntTSL 2 BASIC25.44■■□□□ 1.66
CIITAP33076 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC25.43■■□□□ 1.66
CIITAP33076 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC25.43■■□□□ 1.66
CIITAP33076 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
CIITAP33076 UNC93B3-201ENST00000308076 687 ntBASIC25.43■■□□□ 1.66
CIITAP33076 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
CIITAP33076 MTURN-203ENST00000409688 843 ntTSL 2 BASIC25.43■■□□□ 1.66
CIITAP33076 AC006455.2-201ENST00000429931 906 ntBASIC25.43■■□□□ 1.66
CIITAP33076 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
CIITAP33076 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC25.42■■□□□ 1.66
CIITAP33076 GTSE1-AS1-202ENST00000623117 1518 ntBASIC25.42■■□□□ 1.66
CIITAP33076 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
CIITAP33076 DUX4L4-201ENST00000566884 1269 ntBASIC25.42■■□□□ 1.66
CIITAP33076 AC009086.3-201ENST00000623486 1008 ntBASIC25.42■■□□□ 1.66
CIITAP33076 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
CIITAP33076 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC25.42■■□□□ 1.66
CIITAP33076 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC25.42■■□□□ 1.66
CIITAP33076 AC079630.1-202ENST00000618127 1840 ntBASIC25.42■■□□□ 1.66
CIITAP33076 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
CIITAP33076 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC25.41■■□□□ 1.66
CIITAP33076 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC25.41■■□□□ 1.66
CIITAP33076 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC25.41■■□□□ 1.66
CIITAP33076 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC25.41■■□□□ 1.66
CIITAP33076 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC25.41■■□□□ 1.66
CIITAP33076 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
CIITAP33076 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC25.41■■□□□ 1.66
CIITAP33076 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
CIITAP33076 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC25.41■■□□□ 1.66
CIITAP33076 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
CIITAP33076 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
CIITAP33076 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
CIITAP33076 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
CIITAP33076 SYT6-210ENST00000641643 1587 ntBASIC25.4■■□□□ 1.66
CIITAP33076 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
CIITAP33076 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
CIITAP33076 SERBP1P1-201ENST00000396021 1160 ntBASIC25.4■■□□□ 1.66
CIITAP33076 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
CIITAP33076 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC25.4■■□□□ 1.66
CIITAP33076 AL138724.1-201ENST00000606771 1088 ntBASIC25.4■■□□□ 1.66
CIITAP33076 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
CIITAP33076 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC25.4■■□□□ 1.66
CIITAP33076 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
CIITAP33076 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC25.4■■□□□ 1.66
CIITAP33076 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
CIITAP33076 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC25.39■■□□□ 1.66
CIITAP33076 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
CIITAP33076 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC25.39■■□□□ 1.66
CIITAP33076 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC25.39■■□□□ 1.66
CIITAP33076 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
CIITAP33076 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC25.39■■□□□ 1.66
CIITAP33076 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
CIITAP33076 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC25.39■■□□□ 1.66
CIITAP33076 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC25.39■■□□□ 1.65
CIITAP33076 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC25.39■■□□□ 1.65
CIITAP33076 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC25.39■■□□□ 1.65
CIITAP33076 LINC01529-204ENST00000636474 1715 ntBASIC25.38■■□□□ 1.65
CIITAP33076 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC25.38■■□□□ 1.65
CIITAP33076 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC25.38■■□□□ 1.65
CIITAP33076 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC25.38■■□□□ 1.65
CIITAP33076 AC106739.1-201ENST00000617035 715 ntBASIC25.38■■□□□ 1.65
CIITAP33076 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC25.38■■□□□ 1.65
CIITAP33076 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC25.38■■□□□ 1.65
CIITAP33076 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
CIITAP33076 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC25.37■■□□□ 1.65
CIITAP33076 PTCHD3P2-201ENST00000424937 1205 ntBASIC25.37■■□□□ 1.65
CIITAP33076 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
CIITAP33076 MIR3181-201ENST00000578512 73 ntBASIC25.37■■□□□ 1.65
CIITAP33076 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC25.37■■□□□ 1.65
CIITAP33076 AL136162.1-201ENST00000607711 1078 ntBASIC25.37■■□□□ 1.65
CIITAP33076 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC25.37■■□□□ 1.65
CIITAP33076 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
CIITAP33076 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC25.36■■□□□ 1.65
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms