Protein–RNA interactions for Protein: P30531

SLC6A1, Sodium- and chloride-dependent GABA transporter 1, humanhuman

Predictions only

Length 599 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A1P30531 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SLC6A1P30531 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SLC6A1P30531 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SLC6A1P30531 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SLC6A1P30531 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SLC6A1P30531 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC19.36■□□□□ 0.69
SLC6A1P30531 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.36■□□□□ 0.69
SLC6A1P30531 REST-210ENST00000638187 1334 ntTSL 5 BASIC19.36■□□□□ 0.69
SLC6A1P30531 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
SLC6A1P30531 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SLC6A1P30531 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC19.36■□□□□ 0.69
SLC6A1P30531 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SLC6A1P30531 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
SLC6A1P30531 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SLC6A1P30531 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SLC6A1P30531 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SLC6A1P30531 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SLC6A1P30531 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
SLC6A1P30531 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC19.35■□□□□ 0.69
SLC6A1P30531 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC19.35■□□□□ 0.69
SLC6A1P30531 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
SLC6A1P30531 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SLC6A1P30531 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SLC6A1P30531 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SLC6A1P30531 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SLC6A1P30531 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SLC6A1P30531 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SLC6A1P30531 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
SLC6A1P30531 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC19.34■□□□□ 0.69
SLC6A1P30531 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SLC6A1P30531 EI24-213ENST00000618552 1747 ntTSL 5 BASIC19.34■□□□□ 0.69
SLC6A1P30531 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SLC6A1P30531 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SLC6A1P30531 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC19.34■□□□□ 0.69
SLC6A1P30531 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
SLC6A1P30531 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC19.34■□□□□ 0.69
SLC6A1P30531 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SLC6A1P30531 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SLC6A1P30531 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC19.33■□□□□ 0.69
SLC6A1P30531 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC19.33■□□□□ 0.69
SLC6A1P30531 AC092053.2-201ENST00000640557 1818 ntBASIC19.33■□□□□ 0.69
SLC6A1P30531 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SLC6A1P30531 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SLC6A1P30531 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC19.33■□□□□ 0.68
SLC6A1P30531 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SLC6A1P30531 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SLC6A1P30531 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SLC6A1P30531 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SLC6A1P30531 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
SLC6A1P30531 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SLC6A1P30531 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC19.32■□□□□ 0.68
SLC6A1P30531 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SLC6A1P30531 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
SLC6A1P30531 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SLC6A1P30531 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC19.32■□□□□ 0.68
SLC6A1P30531 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC19.32■□□□□ 0.68
SLC6A1P30531 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
SLC6A1P30531 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.32■□□□□ 0.68
SLC6A1P30531 AC139530.1-201ENST00000575312 1977 ntBASIC19.32■□□□□ 0.68
SLC6A1P30531 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
SLC6A1P30531 H19-210ENST00000439725 1929 ntTSL 2 BASIC19.31■□□□□ 0.68
SLC6A1P30531 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
SLC6A1P30531 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SLC6A1P30531 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SLC6A1P30531 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
SLC6A1P30531 AC026310.3-201ENST00000625186 2373 ntBASIC19.31■□□□□ 0.68
SLC6A1P30531 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SLC6A1P30531 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SLC6A1P30531 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SLC6A1P30531 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SLC6A1P30531 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SLC6A1P30531 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC19.3■□□□□ 0.68
SLC6A1P30531 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SLC6A1P30531 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SLC6A1P30531 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SLC6A1P30531 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SLC6A1P30531 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC19.3■□□□□ 0.68
SLC6A1P30531 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SLC6A1P30531 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC19.29■□□□□ 0.68
SLC6A1P30531 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SLC6A1P30531 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SLC6A1P30531 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SLC6A1P30531 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
SLC6A1P30531 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SLC6A1P30531 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC19.29■□□□□ 0.68
SLC6A1P30531 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SLC6A1P30531 HYI-213ENST00000583037 1322 ntTSL 5 BASIC19.28■□□□□ 0.68
SLC6A1P30531 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SLC6A1P30531 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SLC6A1P30531 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SLC6A1P30531 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SLC6A1P30531 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SLC6A1P30531 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC19.28■□□□□ 0.68
SLC6A1P30531 MED25-210ENST00000612854 801 ntTSL 5 BASIC19.28■□□□□ 0.68
SLC6A1P30531 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SLC6A1P30531 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC19.28■□□□□ 0.68
SLC6A1P30531 MED25-214ENST00000622402 642 ntTSL 5 BASIC19.28■□□□□ 0.68
SLC6A1P30531 AC012354.3-201ENST00000623734 483 ntBASIC19.28■□□□□ 0.68
SLC6A1P30531 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SLC6A1P30531 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 12.6 ms