Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC30.2■■■□□ 2.43
RXRBP28702 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
RXRBP28702 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC30.2■■■□□ 2.42
RXRBP28702 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC30.2■■■□□ 2.42
RXRBP28702 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC30.19■■■□□ 2.42
RXRBP28702 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC30.19■■■□□ 2.42
RXRBP28702 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC30.19■■■□□ 2.42
RXRBP28702 SPI1-203ENST00000533030 661 ntTSL 2 BASIC30.19■■■□□ 2.42
RXRBP28702 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC30.19■■■□□ 2.42
RXRBP28702 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC30.18■■■□□ 2.42
RXRBP28702 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
RXRBP28702 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
RXRBP28702 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
RXRBP28702 SLC7A5P2-201ENST00000553010 536 ntBASIC30.18■■■□□ 2.42
RXRBP28702 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC30.17■■■□□ 2.42
RXRBP28702 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC30.17■■■□□ 2.42
RXRBP28702 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC30.17■■■□□ 2.42
RXRBP28702 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC30.17■■■□□ 2.42
RXRBP28702 PRORSD1P-201ENST00000295112 541 ntBASIC30.17■■■□□ 2.42
RXRBP28702 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
RXRBP28702 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
RXRBP28702 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
RXRBP28702 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC30.17■■■□□ 2.42
RXRBP28702 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
RXRBP28702 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC30.17■■■□□ 2.42
RXRBP28702 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC30.17■■■□□ 2.42
RXRBP28702 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
RXRBP28702 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
RXRBP28702 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
RXRBP28702 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC30.16■■■□□ 2.42
RXRBP28702 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC30.16■■■□□ 2.42
RXRBP28702 AP006294.2-201ENST00000641667 209 ntBASIC30.16■■■□□ 2.42
RXRBP28702 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
RXRBP28702 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC30.15■■■□□ 2.42
RXRBP28702 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
RXRBP28702 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC30.15■■■□□ 2.42
RXRBP28702 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
RXRBP28702 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
RXRBP28702 RPS2P52-201ENST00000469610 820 ntBASIC30.15■■■□□ 2.42
RXRBP28702 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC30.15■■■□□ 2.42
RXRBP28702 PFKL-212ENST00000628044 129 ntTSL 3 BASIC30.15■■■□□ 2.42
RXRBP28702 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
RXRBP28702 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC30.15■■■□□ 2.42
RXRBP28702 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC30.14■■■□□ 2.42
RXRBP28702 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
RXRBP28702 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
RXRBP28702 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC30.14■■■□□ 2.42
RXRBP28702 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC30.14■■■□□ 2.42
RXRBP28702 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC30.14■■■□□ 2.42
RXRBP28702 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC30.13■■■□□ 2.41
RXRBP28702 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC30.13■■■□□ 2.41
RXRBP28702 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC30.13■■■□□ 2.41
RXRBP28702 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
RXRBP28702 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
RXRBP28702 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC30.13■■■□□ 2.41
RXRBP28702 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC30.13■■■□□ 2.41
RXRBP28702 SMUG1P1-201ENST00000590640 811 ntBASIC30.13■■■□□ 2.41
RXRBP28702 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
RXRBP28702 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC30.13■■■□□ 2.41
RXRBP28702 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC30.13■■■□□ 2.41
RXRBP28702 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
RXRBP28702 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC30.12■■■□□ 2.41
RXRBP28702 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
RXRBP28702 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
RXRBP28702 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC30.12■■■□□ 2.41
RXRBP28702 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
RXRBP28702 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC30.11■■■□□ 2.41
RXRBP28702 SLC29A4P1-201ENST00000398760 971 ntBASIC30.11■■■□□ 2.41
RXRBP28702 METTL15-202ENST00000403099 795 ntTSL 5 BASIC30.11■■■□□ 2.41
RXRBP28702 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC30.11■■■□□ 2.41
RXRBP28702 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC30.11■■■□□ 2.41
RXRBP28702 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
RXRBP28702 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC30.1■■■□□ 2.41
RXRBP28702 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
RXRBP28702 AC010525.1-201ENST00000585559 441 ntBASIC30.1■■■□□ 2.41
RXRBP28702 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC30.1■■■□□ 2.41
RXRBP28702 AC133041.1-202ENST00000642053 222 ntBASIC30.1■■■□□ 2.41
RXRBP28702 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
RXRBP28702 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
RXRBP28702 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC30.1■■■□□ 2.41
RXRBP28702 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
RXRBP28702 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC30.09■■■□□ 2.41
RXRBP28702 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
RXRBP28702 AL596275.1-201ENST00000423464 877 ntBASIC30.09■■■□□ 2.41
RXRBP28702 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
RXRBP28702 OAS3-207ENST00000551007 998 ntTSL 2 BASIC30.09■■■□□ 2.41
RXRBP28702 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC30.08■■■□□ 2.41
RXRBP28702 AC141586.4-201ENST00000624558 1573 ntBASIC30.08■■■□□ 2.41
RXRBP28702 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC30.08■■■□□ 2.41
RXRBP28702 MAZ-216ENST00000616501 991 ntTSL 5 BASIC30.08■■■□□ 2.41
RXRBP28702 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
RXRBP28702 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC30.07■■■□□ 2.4
RXRBP28702 MFF-208ENST00000409616 1247 ntTSL 5 BASIC30.07■■■□□ 2.4
RXRBP28702 RHEB-204ENST00000472642 900 ntTSL 3 BASIC30.07■■■□□ 2.4
RXRBP28702 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC30.06■■■□□ 2.4
RXRBP28702 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
RXRBP28702 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
RXRBP28702 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC30.06■■■□□ 2.4
RXRBP28702 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC30.06■■■□□ 2.4
RXRBP28702 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC30.06■■■□□ 2.4
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms