Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC26.6■■□□□ 1.85
HMGB1P09429 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC26.6■■□□□ 1.85
HMGB1P09429 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
HMGB1P09429 TFPT-201ENST00000391757 774 ntTSL 5 BASIC26.6■■□□□ 1.85
HMGB1P09429 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC26.6■■□□□ 1.85
HMGB1P09429 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC26.6■■□□□ 1.85
HMGB1P09429 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC26.6■■□□□ 1.85
HMGB1P09429 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
HMGB1P09429 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC26.6■■□□□ 1.85
HMGB1P09429 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC26.59■■□□□ 1.85
HMGB1P09429 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC26.59■■□□□ 1.85
HMGB1P09429 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC26.59■■□□□ 1.85
HMGB1P09429 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
HMGB1P09429 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC26.59■■□□□ 1.85
HMGB1P09429 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
HMGB1P09429 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
HMGB1P09429 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
HMGB1P09429 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
HMGB1P09429 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC26.58■■□□□ 1.85
HMGB1P09429 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
HMGB1P09429 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC26.58■■□□□ 1.85
HMGB1P09429 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC26.58■■□□□ 1.85
HMGB1P09429 UNC93B8-201ENST00000511903 705 ntBASIC26.58■■□□□ 1.85
HMGB1P09429 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.85
HMGB1P09429 LSM4-201ENST00000252816 986 ntTSL 2 BASIC26.57■■□□□ 1.84
HMGB1P09429 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
HMGB1P09429 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC26.57■■□□□ 1.84
HMGB1P09429 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC26.57■■□□□ 1.84
HMGB1P09429 AC068473.5-201ENST00000616428 2072 ntBASIC26.57■■□□□ 1.84
HMGB1P09429 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
HMGB1P09429 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC26.56■■□□□ 1.84
HMGB1P09429 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
HMGB1P09429 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC26.56■■□□□ 1.84
HMGB1P09429 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC26.56■■□□□ 1.84
HMGB1P09429 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
HMGB1P09429 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC26.56■■□□□ 1.84
HMGB1P09429 AC144652.1-201ENST00000609974 1624 ntBASIC26.56■■□□□ 1.84
HMGB1P09429 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
HMGB1P09429 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC26.56■■□□□ 1.84
HMGB1P09429 ME2-208ENST00000638937 2471 ntTSL 5 BASIC26.56■■□□□ 1.84
HMGB1P09429 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC26.55■■□□□ 1.84
HMGB1P09429 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
HMGB1P09429 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC26.55■■□□□ 1.84
HMGB1P09429 AC012676.1-201ENST00000574705 1949 ntBASIC26.55■■□□□ 1.84
HMGB1P09429 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC26.54■■□□□ 1.84
HMGB1P09429 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC26.54■■□□□ 1.84
HMGB1P09429 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
HMGB1P09429 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC26.54■■□□□ 1.84
HMGB1P09429 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
HMGB1P09429 TRIR-205ENST00000592273 783 ntTSL 3 BASIC26.54■■□□□ 1.84
HMGB1P09429 MIR6724-1-201ENST00000616420 92 ntBASIC26.54■■□□□ 1.84
HMGB1P09429 MIR6724-2-201ENST00000616483 92 ntBASIC26.54■■□□□ 1.84
HMGB1P09429 MIR6724-4-201ENST00000617390 92 ntBASIC26.54■■□□□ 1.84
HMGB1P09429 MIR6724-3-201ENST00000622482 92 ntBASIC26.54■■□□□ 1.84
HMGB1P09429 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
HMGB1P09429 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
HMGB1P09429 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC26.53■■□□□ 1.84
HMGB1P09429 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC26.53■■□□□ 1.84
HMGB1P09429 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC26.53■■□□□ 1.84
HMGB1P09429 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC26.53■■□□□ 1.84
HMGB1P09429 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC26.53■■□□□ 1.84
HMGB1P09429 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
HMGB1P09429 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC26.53■■□□□ 1.84
HMGB1P09429 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC26.53■■□□□ 1.84
HMGB1P09429 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
HMGB1P09429 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
HMGB1P09429 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
HMGB1P09429 GUSBP5-201ENST00000418136 578 ntBASIC26.52■■□□□ 1.84
HMGB1P09429 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC26.52■■□□□ 1.84
HMGB1P09429 AL353803.4-201ENST00000565882 1934 ntBASIC26.52■■□□□ 1.84
HMGB1P09429 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
HMGB1P09429 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.84
HMGB1P09429 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC26.51■■□□□ 1.83
HMGB1P09429 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
HMGB1P09429 FP325331.1-202ENST00000623531 1380 ntBASIC26.51■■□□□ 1.83
HMGB1P09429 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC26.51■■□□□ 1.83
HMGB1P09429 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
HMGB1P09429 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
HMGB1P09429 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC26.5■■□□□ 1.83
HMGB1P09429 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC26.5■■□□□ 1.83
HMGB1P09429 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC26.5■■□□□ 1.83
HMGB1P09429 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
HMGB1P09429 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
HMGB1P09429 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC26.5■■□□□ 1.83
HMGB1P09429 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC26.5■■□□□ 1.83
HMGB1P09429 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC26.5■■□□□ 1.83
HMGB1P09429 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC26.5■■□□□ 1.83
HMGB1P09429 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC26.5■■□□□ 1.83
HMGB1P09429 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC26.5■■□□□ 1.83
HMGB1P09429 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
HMGB1P09429 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC26.5■■□□□ 1.83
HMGB1P09429 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC26.49■■□□□ 1.83
HMGB1P09429 KRT16P3-201ENST00000439127 1283 ntBASIC26.49■■□□□ 1.83
HMGB1P09429 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC26.48■■□□□ 1.83
HMGB1P09429 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
HMGB1P09429 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
HMGB1P09429 AC009102.2-201ENST00000606772 1639 ntBASIC26.48■■□□□ 1.83
HMGB1P09429 C9orf163-202ENST00000624034 2573 ntBASIC26.48■■□□□ 1.83
HMGB1P09429 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
HMGB1P09429 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms