Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC20.56■□□□□ 0.88
SPTA1P02549 CD99P1-205ENST00000527459 561 ntBASIC20.56■□□□□ 0.88
SPTA1P02549 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC20.56■□□□□ 0.88
SPTA1P02549 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SPTA1P02549 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC20.56■□□□□ 0.88
SPTA1P02549 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
SPTA1P02549 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC20.56■□□□□ 0.88
SPTA1P02549 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.56■□□□□ 0.88
SPTA1P02549 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC20.56■□□□□ 0.88
SPTA1P02549 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC20.56■□□□□ 0.88
SPTA1P02549 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SPTA1P02549 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SPTA1P02549 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
SPTA1P02549 NCF1B-203ENST00000435988 1254 ntBASIC20.55■□□□□ 0.88
SPTA1P02549 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC20.55■□□□□ 0.88
SPTA1P02549 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC20.55■□□□□ 0.88
SPTA1P02549 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.55■□□□□ 0.88
SPTA1P02549 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SPTA1P02549 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
SPTA1P02549 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SPTA1P02549 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC20.54■□□□□ 0.88
SPTA1P02549 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC20.54■□□□□ 0.88
SPTA1P02549 SLC6A10P-202ENST00000431994 2058 ntBASIC20.54■□□□□ 0.88
SPTA1P02549 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC20.54■□□□□ 0.88
SPTA1P02549 AL355802.2-201ENST00000402069 882 ntBASIC20.54■□□□□ 0.88
SPTA1P02549 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC20.54■□□□□ 0.88
SPTA1P02549 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC20.54■□□□□ 0.88
SPTA1P02549 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
SPTA1P02549 CD37-213ENST00000598095 1598 ntTSL 2 BASIC20.53■□□□□ 0.88
SPTA1P02549 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC20.53■□□□□ 0.88
SPTA1P02549 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
SPTA1P02549 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SPTA1P02549 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SPTA1P02549 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SPTA1P02549 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SPTA1P02549 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
SPTA1P02549 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
SPTA1P02549 WT1-AS_3.1-201ENST00000613262 234 ntBASIC20.53■□□□□ 0.88
SPTA1P02549 PARP1-210ENST00000629232 477 ntTSL 5 BASIC20.53■□□□□ 0.88
SPTA1P02549 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
SPTA1P02549 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC20.52■□□□□ 0.88
SPTA1P02549 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SPTA1P02549 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC20.52■□□□□ 0.88
SPTA1P02549 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SPTA1P02549 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
SPTA1P02549 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SPTA1P02549 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC20.52■□□□□ 0.88
SPTA1P02549 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC20.52■□□□□ 0.88
SPTA1P02549 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SPTA1P02549 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
SPTA1P02549 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SPTA1P02549 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC20.52■□□□□ 0.87
SPTA1P02549 AC008687.6-201ENST00000596318 630 ntBASIC20.52■□□□□ 0.87
SPTA1P02549 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.87
SPTA1P02549 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.52■□□□□ 0.87
SPTA1P02549 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
SPTA1P02549 AC010501.1-201ENST00000606270 1962 ntBASIC20.51■□□□□ 0.87
SPTA1P02549 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SPTA1P02549 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SPTA1P02549 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.51■□□□□ 0.87
SPTA1P02549 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
SPTA1P02549 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
SPTA1P02549 MIR663A-201ENST00000385250 93 ntBASIC20.51■□□□□ 0.87
SPTA1P02549 PPP1R14BP3-201ENST00000509033 445 ntBASIC20.51■□□□□ 0.87
SPTA1P02549 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC20.51■□□□□ 0.87
SPTA1P02549 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SPTA1P02549 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC20.51■□□□□ 0.87
SPTA1P02549 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC20.51■□□□□ 0.87
SPTA1P02549 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SPTA1P02549 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC20.51■□□□□ 0.87
SPTA1P02549 AC073111.5-205ENST00000641717 521 ntBASIC20.51■□□□□ 0.87
SPTA1P02549 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SPTA1P02549 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.5■□□□□ 0.87
SPTA1P02549 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SPTA1P02549 AC004854.2-201ENST00000608450 1441 ntBASIC20.5■□□□□ 0.87
SPTA1P02549 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SPTA1P02549 DET1-205ENST00000558413 583 ntTSL 4 BASIC20.5■□□□□ 0.87
SPTA1P02549 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
SPTA1P02549 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC20.5■□□□□ 0.87
SPTA1P02549 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC20.5■□□□□ 0.87
SPTA1P02549 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC20.5■□□□□ 0.87
SPTA1P02549 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SPTA1P02549 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SPTA1P02549 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
SPTA1P02549 GALNS-213ENST00000569433 723 ntTSL 3 BASIC20.49■□□□□ 0.87
SPTA1P02549 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
SPTA1P02549 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SPTA1P02549 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SPTA1P02549 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
SPTA1P02549 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
SPTA1P02549 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SPTA1P02549 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
SPTA1P02549 DBI-210ENST00000542275 757 ntTSL 5 BASIC20.49■□□□□ 0.87
SPTA1P02549 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC20.49■□□□□ 0.87
SPTA1P02549 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SPTA1P02549 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.49■□□□□ 0.87
SPTA1P02549 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SPTA1P02549 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SPTA1P02549 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SPTA1P02549 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms