Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC23.71■■□□□ 1.39
RTN3O95197 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
RTN3O95197 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC23.7■■□□□ 1.39
RTN3O95197 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC23.7■■□□□ 1.39
RTN3O95197 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
RTN3O95197 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
RTN3O95197 SHD-204ENST00000599689 1729 ntTSL 5 BASIC23.7■■□□□ 1.39
RTN3O95197 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC23.7■■□□□ 1.38
RTN3O95197 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
RTN3O95197 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
RTN3O95197 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
RTN3O95197 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
RTN3O95197 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC23.7■■□□□ 1.38
RTN3O95197 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC23.7■■□□□ 1.38
RTN3O95197 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC23.7■■□□□ 1.38
RTN3O95197 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
RTN3O95197 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
RTN3O95197 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
RTN3O95197 VGF-203ENST00000611537 1622 ntTSL 5 BASIC23.7■■□□□ 1.38
RTN3O95197 AC005837.3-201ENST00000612163 286 ntBASIC23.69■■□□□ 1.38
RTN3O95197 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
RTN3O95197 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC23.69■■□□□ 1.38
RTN3O95197 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
RTN3O95197 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
RTN3O95197 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
RTN3O95197 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC23.68■■□□□ 1.38
RTN3O95197 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
RTN3O95197 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
RTN3O95197 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC23.68■■□□□ 1.38
RTN3O95197 AC024257.2-201ENST00000549699 147 ntBASIC23.68■■□□□ 1.38
RTN3O95197 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC23.68■■□□□ 1.38
RTN3O95197 AL138724.1-201ENST00000606771 1088 ntBASIC23.68■■□□□ 1.38
RTN3O95197 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC23.68■■□□□ 1.38
RTN3O95197 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
RTN3O95197 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
RTN3O95197 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC23.67■■□□□ 1.38
RTN3O95197 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
RTN3O95197 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
RTN3O95197 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC23.67■■□□□ 1.38
RTN3O95197 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
RTN3O95197 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC23.67■■□□□ 1.38
RTN3O95197 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
RTN3O95197 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
RTN3O95197 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
RTN3O95197 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
RTN3O95197 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.38
RTN3O95197 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
RTN3O95197 SERBP1P1-201ENST00000396021 1160 ntBASIC23.66■■□□□ 1.38
RTN3O95197 PTCHD3P2-201ENST00000424937 1205 ntBASIC23.66■■□□□ 1.38
RTN3O95197 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC23.66■■□□□ 1.38
RTN3O95197 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC23.66■■□□□ 1.38
RTN3O95197 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC23.66■■□□□ 1.38
RTN3O95197 AC009086.3-201ENST00000623486 1008 ntBASIC23.66■■□□□ 1.38
RTN3O95197 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC23.66■■□□□ 1.38
RTN3O95197 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
RTN3O95197 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
RTN3O95197 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
RTN3O95197 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC23.65■■□□□ 1.38
RTN3O95197 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC23.65■■□□□ 1.38
RTN3O95197 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
RTN3O95197 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
RTN3O95197 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC23.64■■□□□ 1.38
RTN3O95197 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
RTN3O95197 EDA-201ENST00000338901 1233 ntBASIC23.64■■□□□ 1.37
RTN3O95197 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC23.64■■□□□ 1.37
RTN3O95197 AC011298.3-201ENST00000615796 283 ntBASIC23.64■■□□□ 1.37
RTN3O95197 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC23.64■■□□□ 1.37
RTN3O95197 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
RTN3O95197 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC23.64■■□□□ 1.37
RTN3O95197 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC23.63■■□□□ 1.37
RTN3O95197 AC133561.1-201ENST00000568600 2415 ntBASIC23.63■■□□□ 1.37
RTN3O95197 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
RTN3O95197 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
RTN3O95197 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
RTN3O95197 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC23.63■■□□□ 1.37
RTN3O95197 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC23.63■■□□□ 1.37
RTN3O95197 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC23.63■■□□□ 1.37
RTN3O95197 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
RTN3O95197 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
RTN3O95197 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC23.63■■□□□ 1.37
RTN3O95197 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
RTN3O95197 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC23.63■■□□□ 1.37
RTN3O95197 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
RTN3O95197 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
RTN3O95197 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
RTN3O95197 AC004812.2-201ENST00000611079 2094 ntBASIC23.63■■□□□ 1.37
RTN3O95197 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
RTN3O95197 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC23.62■■□□□ 1.37
RTN3O95197 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC23.62■■□□□ 1.37
RTN3O95197 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC23.62■■□□□ 1.37
RTN3O95197 AC006455.2-201ENST00000429931 906 ntBASIC23.62■■□□□ 1.37
RTN3O95197 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC23.62■■□□□ 1.37
RTN3O95197 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC23.62■■□□□ 1.37
RTN3O95197 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
RTN3O95197 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
RTN3O95197 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
RTN3O95197 PTMA-205ENST00000410064 814 ntTSL 2 BASIC23.61■■□□□ 1.37
RTN3O95197 AL355001.2-201ENST00000620617 1191 ntBASIC23.61■■□□□ 1.37
RTN3O95197 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
RTN3O95197 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms