Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LDB3O75112 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LDB3O75112 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LDB3O75112 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.18■□□□□ 0.98
LDB3O75112 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LDB3O75112 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LDB3O75112 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21.18■□□□□ 0.98
LDB3O75112 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
LDB3O75112 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LDB3O75112 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LDB3O75112 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LDB3O75112 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
LDB3O75112 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LDB3O75112 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LDB3O75112 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
LDB3O75112 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC21.17■□□□□ 0.98
LDB3O75112 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LDB3O75112 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC21.17■□□□□ 0.98
LDB3O75112 QDPR-206ENST00000508623 601 ntTSL 3 BASIC21.17■□□□□ 0.98
LDB3O75112 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC21.17■□□□□ 0.98
LDB3O75112 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LDB3O75112 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC21.17■□□□□ 0.98
LDB3O75112 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LDB3O75112 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
LDB3O75112 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.17■□□□□ 0.98
LDB3O75112 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LDB3O75112 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC21.16■□□□□ 0.98
LDB3O75112 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
LDB3O75112 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LDB3O75112 ANOS2P-203ENST00000472227 1816 ntBASIC21.16■□□□□ 0.98
LDB3O75112 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LDB3O75112 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
LDB3O75112 AC079630.1-202ENST00000618127 1840 ntBASIC21.15■□□□□ 0.98
LDB3O75112 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
LDB3O75112 CASK-201ENST00000378154 2494 ntTSL 5 BASIC21.15■□□□□ 0.98
LDB3O75112 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC21.15■□□□□ 0.98
LDB3O75112 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC21.15■□□□□ 0.98
LDB3O75112 AC131281.2-201ENST00000520478 145 ntBASIC21.15■□□□□ 0.98
LDB3O75112 AL512631.2-201ENST00000604634 923 ntBASIC21.15■□□□□ 0.98
LDB3O75112 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC21.15■□□□□ 0.98
LDB3O75112 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
LDB3O75112 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
LDB3O75112 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LDB3O75112 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC21.15■□□□□ 0.98
LDB3O75112 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
LDB3O75112 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
LDB3O75112 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
LDB3O75112 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
LDB3O75112 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
LDB3O75112 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
LDB3O75112 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
LDB3O75112 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LDB3O75112 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
LDB3O75112 NKILA-201ENST00000613231 537 ntTSL 4 BASIC21.14■□□□□ 0.97
LDB3O75112 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LDB3O75112 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LDB3O75112 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
LDB3O75112 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC21.13■□□□□ 0.97
LDB3O75112 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC21.13■□□□□ 0.97
LDB3O75112 MIR4466-201ENST00000606121 54 ntBASIC21.13■□□□□ 0.97
LDB3O75112 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC21.13■□□□□ 0.97
LDB3O75112 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LDB3O75112 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
LDB3O75112 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
LDB3O75112 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC21.12■□□□□ 0.97
LDB3O75112 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LDB3O75112 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC21.12■□□□□ 0.97
LDB3O75112 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
LDB3O75112 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC21.12■□□□□ 0.97
LDB3O75112 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
LDB3O75112 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
LDB3O75112 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
LDB3O75112 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC21.11■□□□□ 0.97
LDB3O75112 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LDB3O75112 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LDB3O75112 C17orf82-201ENST00000623772 1530 ntBASIC21.11■□□□□ 0.97
LDB3O75112 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LDB3O75112 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LDB3O75112 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
LDB3O75112 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LDB3O75112 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LDB3O75112 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LDB3O75112 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
LDB3O75112 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LDB3O75112 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC21.11■□□□□ 0.97
LDB3O75112 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
LDB3O75112 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
LDB3O75112 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
LDB3O75112 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
LDB3O75112 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LDB3O75112 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LDB3O75112 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
LDB3O75112 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC21.1■□□□□ 0.97
LDB3O75112 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
LDB3O75112 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LDB3O75112 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LDB3O75112 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC21.1■□□□□ 0.97
LDB3O75112 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
LDB3O75112 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LDB3O75112 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms