Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CBX4O00257 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CBX4O00257 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
CBX4O00257 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CBX4O00257 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CBX4O00257 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CBX4O00257 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC22.98■■□□□ 1.27
CBX4O00257 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
CBX4O00257 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC22.98■■□□□ 1.27
CBX4O00257 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC22.98■■□□□ 1.27
CBX4O00257 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CBX4O00257 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
CBX4O00257 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
CBX4O00257 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
CBX4O00257 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CBX4O00257 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
CBX4O00257 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
CBX4O00257 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC22.97■■□□□ 1.27
CBX4O00257 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC22.97■■□□□ 1.27
CBX4O00257 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC22.97■■□□□ 1.27
CBX4O00257 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC22.97■■□□□ 1.27
CBX4O00257 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC22.97■■□□□ 1.27
CBX4O00257 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
CBX4O00257 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
CBX4O00257 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC22.96■■□□□ 1.27
CBX4O00257 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC22.96■■□□□ 1.27
CBX4O00257 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC22.96■■□□□ 1.27
CBX4O00257 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC22.96■■□□□ 1.27
CBX4O00257 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC22.96■■□□□ 1.27
CBX4O00257 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
CBX4O00257 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
CBX4O00257 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC22.96■■□□□ 1.27
CBX4O00257 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
CBX4O00257 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC22.96■■□□□ 1.27
CBX4O00257 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC22.95■■□□□ 1.26
CBX4O00257 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC22.95■■□□□ 1.26
CBX4O00257 AC092171.4-201ENST00000609130 632 ntBASIC22.95■■□□□ 1.26
CBX4O00257 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC22.95■■□□□ 1.26
CBX4O00257 AC241377.3-202ENST00000626088 1088 ntBASIC22.95■■□□□ 1.26
CBX4O00257 AC241585.3-202ENST00000628937 1088 ntBASIC22.95■■□□□ 1.26
CBX4O00257 AC245100.8-202ENST00000629247 1058 ntBASIC22.95■■□□□ 1.26
CBX4O00257 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC22.95■■□□□ 1.26
CBX4O00257 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
CBX4O00257 VGF-203ENST00000611537 1622 ntTSL 5 BASIC22.94■■□□□ 1.26
CBX4O00257 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC22.94■■□□□ 1.26
CBX4O00257 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
CBX4O00257 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC22.94■■□□□ 1.26
CBX4O00257 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC22.94■■□□□ 1.26
CBX4O00257 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC22.94■■□□□ 1.26
CBX4O00257 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC22.93■■□□□ 1.26
CBX4O00257 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CBX4O00257 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC22.93■■□□□ 1.26
CBX4O00257 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CBX4O00257 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CBX4O00257 UNC93B3-201ENST00000308076 687 ntBASIC22.93■■□□□ 1.26
CBX4O00257 ASB1-202ENST00000409297 878 ntTSL 5 BASIC22.93■■□□□ 1.26
CBX4O00257 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC22.93■■□□□ 1.26
CBX4O00257 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CBX4O00257 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
CBX4O00257 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
CBX4O00257 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CBX4O00257 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC22.93■■□□□ 1.26
CBX4O00257 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC22.93■■□□□ 1.26
CBX4O00257 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC22.93■■□□□ 1.26
CBX4O00257 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC22.93■■□□□ 1.26
CBX4O00257 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CBX4O00257 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CBX4O00257 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
CBX4O00257 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CBX4O00257 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC22.92■■□□□ 1.26
CBX4O00257 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC22.92■■□□□ 1.26
CBX4O00257 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC22.92■■□□□ 1.26
CBX4O00257 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
CBX4O00257 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CBX4O00257 AC009086.3-201ENST00000623486 1008 ntBASIC22.92■■□□□ 1.26
CBX4O00257 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CBX4O00257 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC22.92■■□□□ 1.26
CBX4O00257 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC22.92■■□□□ 1.26
CBX4O00257 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC22.92■■□□□ 1.26
CBX4O00257 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
CBX4O00257 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC22.91■■□□□ 1.26
CBX4O00257 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC22.91■■□□□ 1.26
CBX4O00257 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
CBX4O00257 DUX4L19-201ENST00000557448 1267 ntBASIC22.91■■□□□ 1.26
CBX4O00257 SYT6-210ENST00000641643 1587 ntBASIC22.91■■□□□ 1.26
CBX4O00257 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
CBX4O00257 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC22.91■■□□□ 1.26
CBX4O00257 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC22.91■■□□□ 1.26
CBX4O00257 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
CBX4O00257 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC22.91■■□□□ 1.26
CBX4O00257 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC22.91■■□□□ 1.26
CBX4O00257 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
CBX4O00257 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.9■■□□□ 1.26
CBX4O00257 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC22.9■■□□□ 1.26
CBX4O00257 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC22.9■■□□□ 1.26
CBX4O00257 AC006455.2-201ENST00000429931 906 ntBASIC22.9■■□□□ 1.26
CBX4O00257 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
CBX4O00257 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC22.9■■□□□ 1.26
CBX4O00257 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC22.9■■□□□ 1.26
CBX4O00257 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC22.89■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms