Protein–RNA interactions for Protein: A0A0B4J263

TRAV39, T-cell receptor alpha variable 39 (Fragment), humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV39A0A0B4J263 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
TRAV39A0A0B4J263 SENP5-202ENST00000419026 973 ntTSL 3 BASIC18.81■□□□□ 0.6
TRAV39A0A0B4J263 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
TRAV39A0A0B4J263 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
TRAV39A0A0B4J263 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
TRAV39A0A0B4J263 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC18.81■□□□□ 0.6
TRAV39A0A0B4J263 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
TRAV39A0A0B4J263 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRAV39A0A0B4J263 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRAV39A0A0B4J263 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRAV39A0A0B4J263 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
TRAV39A0A0B4J263 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRAV39A0A0B4J263 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC18.8■□□□□ 0.6
TRAV39A0A0B4J263 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC18.8■□□□□ 0.6
TRAV39A0A0B4J263 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC18.8■□□□□ 0.6
TRAV39A0A0B4J263 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC18.8■□□□□ 0.6
TRAV39A0A0B4J263 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRAV39A0A0B4J263 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
TRAV39A0A0B4J263 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC18.8■□□□□ 0.6
TRAV39A0A0B4J263 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC18.8■□□□□ 0.6
TRAV39A0A0B4J263 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV39A0A0B4J263 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV39A0A0B4J263 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV39A0A0B4J263 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV39A0A0B4J263 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
TRAV39A0A0B4J263 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV39A0A0B4J263 C1orf229-201ENST00000623686 2258 ntBASIC18.79■□□□□ 0.6
TRAV39A0A0B4J263 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV39A0A0B4J263 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV39A0A0B4J263 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV39A0A0B4J263 TK2-202ENST00000417693 1046 ntTSL 2 BASIC18.79■□□□□ 0.6
TRAV39A0A0B4J263 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV39A0A0B4J263 SNX5-217ENST00000606557 1087 ntBASIC18.79■□□□□ 0.6
TRAV39A0A0B4J263 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC18.79■□□□□ 0.6
TRAV39A0A0B4J263 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV39A0A0B4J263 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
TRAV39A0A0B4J263 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
TRAV39A0A0B4J263 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRAV39A0A0B4J263 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
TRAV39A0A0B4J263 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC18.78■□□□□ 0.6
TRAV39A0A0B4J263 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC18.78■□□□□ 0.6
TRAV39A0A0B4J263 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
TRAV39A0A0B4J263 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRAV39A0A0B4J263 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
TRAV39A0A0B4J263 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRAV39A0A0B4J263 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRAV39A0A0B4J263 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRAV39A0A0B4J263 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRAV39A0A0B4J263 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRAV39A0A0B4J263 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRAV39A0A0B4J263 AC079630.1-202ENST00000618127 1840 ntBASIC18.77■□□□□ 0.6
TRAV39A0A0B4J263 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRAV39A0A0B4J263 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
TRAV39A0A0B4J263 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRAV39A0A0B4J263 RARRES2P1-201ENST00000474487 481 ntBASIC18.77■□□□□ 0.6
TRAV39A0A0B4J263 AC137630.3-201ENST00000607245 391 ntBASIC18.77■□□□□ 0.6
TRAV39A0A0B4J263 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
TRAV39A0A0B4J263 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
TRAV39A0A0B4J263 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.59
TRAV39A0A0B4J263 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC18.76■□□□□ 0.59
TRAV39A0A0B4J263 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC18.76■□□□□ 0.59
TRAV39A0A0B4J263 LSM7-203ENST00000585409 512 ntTSL 2 BASIC18.76■□□□□ 0.59
TRAV39A0A0B4J263 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC18.76■□□□□ 0.59
TRAV39A0A0B4J263 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC18.76■□□□□ 0.59
TRAV39A0A0B4J263 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRAV39A0A0B4J263 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC18.76■□□□□ 0.59
TRAV39A0A0B4J263 TERT-206ENST00000508104 2486 ntTSL 5 BASIC18.76■□□□□ 0.59
TRAV39A0A0B4J263 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
TRAV39A0A0B4J263 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRAV39A0A0B4J263 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRAV39A0A0B4J263 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC18.75■□□□□ 0.59
TRAV39A0A0B4J263 PRTG-204ENST00000561292 833 ntTSL 3 BASIC18.75■□□□□ 0.59
TRAV39A0A0B4J263 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
TRAV39A0A0B4J263 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
TRAV39A0A0B4J263 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRAV39A0A0B4J263 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRAV39A0A0B4J263 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
TRAV39A0A0B4J263 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRAV39A0A0B4J263 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TRAV39A0A0B4J263 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TRAV39A0A0B4J263 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC18.74■□□□□ 0.59
TRAV39A0A0B4J263 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC18.74■□□□□ 0.59
TRAV39A0A0B4J263 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
TRAV39A0A0B4J263 REST-206ENST00000612429 1376 ntTSL 5 BASIC18.74■□□□□ 0.59
TRAV39A0A0B4J263 REST-207ENST00000616975 1370 ntTSL 5 BASIC18.74■□□□□ 0.59
TRAV39A0A0B4J263 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TRAV39A0A0B4J263 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
TRAV39A0A0B4J263 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRAV39A0A0B4J263 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC18.74■□□□□ 0.59
TRAV39A0A0B4J263 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
TRAV39A0A0B4J263 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
TRAV39A0A0B4J263 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC18.74■□□□□ 0.59
TRAV39A0A0B4J263 CLTA-210ENST00000540080 989 ntTSL 2 BASIC18.74■□□□□ 0.59
TRAV39A0A0B4J263 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC18.74■□□□□ 0.59
TRAV39A0A0B4J263 COMT-203ENST00000403184 2217 ntTSL 2 BASIC18.74■□□□□ 0.59
TRAV39A0A0B4J263 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
TRAV39A0A0B4J263 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
TRAV39A0A0B4J263 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRAV39A0A0B4J263 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
TRAV39A0A0B4J263 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 852.5 ms