Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 RN7SL530P-201ENST00000485097 298 ntBASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 AL132994.1-201ENST00000554098 400 ntBASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 AC141586.1-203ENST00000567242 366 ntBASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 CALCOCO1-218ENST00000550804 2291 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 AGAP12P-201ENST00000585227 2359 ntBASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 DAXX-201ENST00000266000 2606 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 RCAN2-204ENST00000405162 2457 ntTSL 5 BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 EFHC2-202ENST00000420999 2464 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 LIMS2-206ENST00000409754 1620 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 EPHX2-207ENST00000521400 3140 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 CHID1-202ENST00000429789 1289 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 AC008723.1-201ENST00000506922 207 ntBASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 NAA40-205ENST00000539656 577 ntTSL 4 BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 AL161670.2-201ENST00000557650 1227 ntBASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 AL845331.2-201ENST00000561882 1044 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 PSKH1-201ENST00000291041 3481 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 ADCY7-208ENST00000566433 2535 ntTSL 5 BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 PCBP1-AS1-214ENST00000419542 1309 ntTSL 5 BASIC14.36□□□□□ -0.11
SHROOM3Q8TF72 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 CICP17-201ENST00000418553 2377 ntBASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 AC117503.4-201ENST00000623229 1418 ntBASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 ADGRG3-201ENST00000333493 2728 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 KCTD18-202ENST00000409157 2556 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 BANF1P3-201ENST00000412556 261 ntBASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 BX679664.3-201ENST00000414070 555 ntBASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 AC113935.1-201ENST00000471722 555 ntBASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 GOLGA2P8-201ENST00000505201 779 ntBASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 MCPH1-AS1-201ENST00000515608 2147 ntTSL 5 BASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 EIF3F-209ENST00000640290 372 ntTSL 5 BASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 TRMT2B-203ENST00000372939 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 ATP2B2-210ENST00000638646 3465 ntTSL 5 BASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 SIGLEC9-201ENST00000250360 1690 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 KCNH6-202ENST00000456941 2928 ntTSL 5 BASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 USF1-202ENST00000368020 1717 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 OPRL1-202ENST00000349451 3369 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
SHROOM3Q8TF72 EIF3F-201ENST00000309828 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 DEFB123-201ENST00000376309 467 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 RPSAP31-201ENST00000416648 895 ntBASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 RPS27L-203ENST00000439025 970 ntTSL 2 BASIC14.34□□□□□ -0.11
SHROOM3Q8TF72 PPOX-204ENST00000462866 473 ntTSL 5 BASIC14.34□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms